Variant report

Variant	rs58960015
Chromosome Location	chr1:156365938-156365939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61074729	0.94[AFR][1000 genomes]
rs73010646	0.91[AFR][1000 genomes]
rs73010647	0.87[AFR][1000 genomes]
rs73010666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010670	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases
2	nsv1011302	chr1:156081561-156532624	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	380 gene(s)	inside rSNPs	diseases
3	nsv915822	chr1:156226286-156651655	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	367 gene(s)	inside rSNPs	diseases
4	esv1793632	chr1:156338992-156366178	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
5	nsv1005335	chr1:156347358-156905648	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	395 gene(s)	inside rSNPs	diseases
6	nsv1004910	chr1:156347358-157258223	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	430 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:156358600-156367600	Weak transcription	Right Atrium	heart
2	chr1:156362000-156369200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:156363000-156368800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:156363000-156368800	Weak transcription	Fetal Brain Male	brain
5	chr1:156363000-156369200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:156363200-156369800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:156363200-156371000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:156363400-156369000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:156363400-156369000	Weak transcription	Fetal Brain Female	brain
10	chr1:156363600-156368800	Weak transcription	A549	lung
11	chr1:156363600-156369000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:156364000-156368200	Weak transcription	Hela-S3	cervix
13	chr1:156364200-156369200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:156364400-156369000	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:156364600-156369200	Weak transcription	Brain Substantia Nigra	brain
16	chr1:156365000-156368200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr1:156365000-156368800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:156365200-156368000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr1:156365200-156369000	Weak transcription	Brain Germinal Matrix	brain
20	chr1:156365400-156369000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:156365800-156366000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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