Variant report
| Variant | rs58969648 |
|---|---|
| Chromosome Location | chr11:106480989-106480990 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:106480957..106482975-chr11:106532869..106534369,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11820192 | 0.91[ASN][1000 genomes] |
| rs17105864 | 0.95[ASN][1000 genomes] |
| rs17105870 | 0.95[ASN][1000 genomes] |
| rs1938627 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1938629 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1938630 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34083913 | 0.95[ASN][1000 genomes] |
| rs4340012 | 0.95[ASN][1000 genomes] |
| rs4582939 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55703757 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55904925 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61095533 | 0.95[ASN][1000 genomes] |
| rs7124340 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73544102 | 0.95[ASN][1000 genomes] |
| rs73546004 | 0.95[ASN][1000 genomes] |
| rs73546008 | 0.95[ASN][1000 genomes] |
| rs73546021 | 0.95[ASN][1000 genomes] |
| rs73546024 | 0.95[ASN][1000 genomes] |
| rs7483143 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048381 | chr11:105945117-106561574 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038836 | chr11:106459674-106514773 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv1054602 | chr11:106460454-106514773 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1052457 | chr11:106477599-106507197 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106480000-106482400 | Weak transcription | Placenta Amnion | Placenta Amnion |
