Variant report

Variant	rs58973869
Chromosome Location	chr19:37578446-37578447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16972020	0.94[ASN][1000 genomes]
rs16972024	0.97[ASN][1000 genomes]
rs16972028	0.97[ASN][1000 genomes]
rs16972030	0.97[ASN][1000 genomes]
rs4635449	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58932518	0.94[ASN][1000 genomes]
rs59892552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61448820	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61733481	0.97[ASN][1000 genomes]
rs7247853	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73622753	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37570600-37580000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:37570600-37581000	Weak transcription	Gastric	stomach
3	chr19:37570600-37581600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr19:37570800-37579800	Weak transcription	Hela-S3	cervix
5	chr19:37571000-37580000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:37571000-37594800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:37572400-37594600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
8	chr19:37572600-37595400	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr19:37572800-37594600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr19:37572800-37594800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr19:37572800-37595400	ZNF genes & repeats	Liver	Liver
12	chr19:37574600-37579600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr19:37575400-37580000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr19:37575400-37592400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:37575400-37595200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr19:37575800-37594800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
17	chr19:37576000-37580600	ZNF genes & repeats	Fetal Intestine Large	intestine
18	chr19:37576000-37587800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
19	chr19:37576200-37581200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
20	chr19:37576200-37588000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
21	chr19:37576200-37591200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
22	chr19:37576200-37595600	ZNF genes & repeats	Ovary	ovary
23	chr19:37576200-37595800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr19:37576600-37579800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr19:37576600-37579800	Weak transcription	Stomach Mucosa	stomach
26	chr19:37576600-37580000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr19:37576600-37580000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr19:37576600-37581200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr19:37577000-37580000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr19:37577200-37579000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr19:37577200-37580000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:37577200-37580000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr19:37577200-37580000	Weak transcription	HSMM	muscle
34	chr19:37577400-37579200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
35	chr19:37577400-37579800	Weak transcription	Left Ventricle	heart
36	chr19:37577400-37592400	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr19:37577800-37579000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr19:37577800-37579000	Weak transcription	Brain Substantia Nigra	brain
39	chr19:37577800-37579800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr19:37577800-37579800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr19:37577800-37579800	Weak transcription	Fetal Kidney	kidney
42	chr19:37578000-37578800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr19:37578000-37578800	Weak transcription	Primary T cells from cord blood	blood
44	chr19:37578000-37578800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr19:37578000-37578800	Weak transcription	Dnd41	blood
46	chr19:37578000-37579000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr19:37578000-37579800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr19:37578000-37579800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr19:37578000-37579800	Weak transcription	Right Ventricle	heart
50	chr19:37578200-37579000	Weak transcription	Fetal Lung	lung

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