The 2.0 version of rSNPBase

Variant report

Variant rs58983589
Chromosome Location chr3:179381105-179381106
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:179372200-179383800 Weak transcription Esophagus oesophagus
2 chr3:179372600-179381200 Weak transcription Pancreas Pancrea
3 chr3:179372600-179383800 Weak transcription HSMM muscle
4 chr3:179372600-179384200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr3:179372600-179403200 Weak transcription Primary B cells from cord blood blood
6 chr3:179372600-179408400 Weak transcription Fetal Intestine Small intestine
7 chr3:179372600-179425200 Weak transcription Primary hematopoietic stem cells blood
8 chr3:179373000-179383400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr3:179373000-179383800 Weak transcription Muscle Satellite Cultured Cells --
10 chr3:179373200-179383600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr3:179373200-179383800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr3:179373200-179383800 Weak transcription Fetal Brain Male brain
13 chr3:179373200-179384200 Weak transcription NHLF lung
14 chr3:179374600-179408000 Weak transcription Primary hematopoietic stem cells short term culture blood
15 chr3:179374800-179384000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr3:179375000-179389200 Weak transcription Hela-S3 cervix
17 chr3:179376000-179384200 Weak transcription Fetal Muscle Trunk muscle
18 chr3:179376600-179384000 Weak transcription Fetal Stomach stomach
19 chr3:179376600-179400800 Weak transcription Dnd41 blood
20 chr3:179376800-179381200 Weak transcription Lung lung
21 chr3:179376800-179383800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
22 chr3:179376800-179383800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr3:179377000-179383800 Enhancers Skeletal Muscle Male skeletal muscle
24 chr3:179377000-179384000 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr3:179377000-179384000 Weak transcription Stomach Smooth Muscle stomach
26 chr3:179377200-179382400 Weak transcription HSMMtube muscle
27 chr3:179377200-179383800 Enhancers Skeletal Muscle Female skeletal muscle
28 chr3:179378200-179381800 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr3:179378400-179381600 Enhancers Fetal Adrenal Gland Adrenal Gland
30 chr3:179379200-179381400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr3:179379200-179385200 Enhancers Fetal Heart heart
32 chr3:179379400-179381800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
33 chr3:179379400-179381800 Enhancers Brain Angular Gyrus brain
34 chr3:179379400-179381800 Enhancers Brain Inferior Temporal Lobe brain
35 chr3:179379400-179382600 Enhancers Left Ventricle heart
36 chr3:179379600-179381800 Enhancers Cortex derived primary cultured neurospheres brain
37 chr3:179379800-179381200 Weak transcription Right Atrium heart
38 chr3:179379800-179382200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
39 chr3:179379800-179383800 Weak transcription Ovary ovary
40 chr3:179380000-179381200 Enhancers Brain Hippocampus Middle brain
41 chr3:179380000-179381600 Enhancers Brain Cingulate Gyrus brain
42 chr3:179380000-179383800 Weak transcription Fetal Brain Female brain
43 chr3:179380200-179381400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr3:179380200-179381600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr3:179380200-179383800 Weak transcription H1 Cell Line embryonic stem cell
46 chr3:179380200-179383800 Weak transcription iPS-15b Cell Line embryonic stem cell
47 chr3:179380400-179381200 Weak transcription Fetal Muscle Leg muscle
48 chr3:179380400-179381400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
49 chr3:179380400-179381800 Enhancers Brain Substantia Nigra brain
50 chr3:179380400-179383800 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015