Variant report

Variant	rs58988374
Chromosome Location	chr14:20980818-20980819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17112807	0.85[AFR][1000 genomes]
rs17113273	1.00[AMR][1000 genomes]
rs56833696	1.00[AMR][1000 genomes]
rs59800190	1.00[AMR][1000 genomes]
rs61061587	1.00[AMR][1000 genomes]
rs73583394	1.00[AMR][1000 genomes]
rs73585305	1.00[AMR][1000 genomes]
rs73585312	1.00[AMR][1000 genomes]
rs74034350	1.00[AMR][1000 genomes]
rs74037153	1.00[AMR][1000 genomes]
rs891298	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:20979400-20981200	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:20979400-20981800	Enhancers	HUVEC	blood vessel
3	chr14:20980000-20981200	Enhancers	Primary B cells from cord blood	blood
4	chr14:20980000-20981200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:20980200-20981000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:20980400-20981200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:20980400-20981200	Enhancers	Osteobl	bone
8	chr14:20980600-20981000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr14:20980600-20981200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:20980600-20981400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:20980800-20981400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr14:20980800-20981400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr14:20980800-20981800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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