The 2.0 version of rSNPBase

Variant report

Variant rs58990204
Chromosome Location chr1:220234019-220234020
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220220000-220236000 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:220220400-220236000 Weak transcription Aorta Aorta
3 chr1:220220400-220236000 Weak transcription HSMMtube muscle
4 chr1:220220400-220238400 Weak transcription Brain Cingulate Gyrus brain
5 chr1:220220400-220240800 Weak transcription NHDF-Ad bronchial
6 chr1:220220400-220243600 Weak transcription H9 Cell Line embryonic stem cell
7 chr1:220220400-220257600 Weak transcription Stomach Mucosa stomach
8 chr1:220220600-220235000 Weak transcription Fetal Muscle Leg muscle
9 chr1:220220600-220236000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:220220600-220236000 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr1:220220600-220236000 Weak transcription Brain Anterior Caudate brain
12 chr1:220220600-220237400 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr1:220220600-220237600 Weak transcription Right Ventricle heart
14 chr1:220220600-220245800 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr1:220220600-220262400 Weak transcription Pancreas Pancrea
16 chr1:220220600-220262400 Weak transcription NHLF lung
17 chr1:220220800-220235000 Weak transcription Stomach Smooth Muscle stomach
18 chr1:220220800-220236000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr1:220220800-220236000 Weak transcription Brain Inferior Temporal Lobe brain
20 chr1:220220800-220236000 Weak transcription Fetal Lung lung
21 chr1:220220800-220237600 Weak transcription Brain Hippocampus Middle brain
22 chr1:220220800-220237600 Weak transcription Colon Smooth Muscle Colon
23 chr1:220220800-220238400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:220220800-220238600 Weak transcription Brain Substantia Nigra brain
25 chr1:220220800-220261600 Weak transcription Fetal Brain Male brain
26 chr1:220221000-220234800 Weak transcription Primary B cells from cord blood blood
27 chr1:220221000-220235000 Weak transcription Primary T helper cells PMA-I stimulated --
28 chr1:220221000-220236200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:220221000-220237800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr1:220224000-220240800 Weak transcription A549 lung
31 chr1:220225800-220245800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr1:220226200-220234200 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr1:220226800-220234800 Weak transcription HSMM muscle
34 chr1:220226800-220240400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:220227400-220236000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr1:220227400-220245600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr1:220227600-220240000 Weak transcription Fetal Kidney kidney
38 chr1:220227800-220245800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr1:220228000-220236000 Weak transcription Brain Angular Gyrus brain
40 chr1:220228200-220240000 Weak transcription Psoas Muscle Psoas
41 chr1:220228400-220238400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
42 chr1:220229000-220235600 Strong transcription Breast Myoepithelial Primary Cells Breast
43 chr1:220229400-220236000 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr1:220229800-220245000 Weak transcription Primary T killer memory cells from peripheral blood blood
45 chr1:220230000-220240600 Weak transcription HMEC breast
46 chr1:220230000-220245800 Weak transcription Primary T helper naive cells from peripheral blood blood
47 chr1:220230600-220236600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:220230600-220239400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
49 chr1:220230800-220234600 Strong transcription Primary neutrophils fromperipheralblood blood
50 chr1:220230800-220242600 Strong transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015