Variant report

Variant	rs59001471
Chromosome Location	chr7:121697337-121697338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10246405	0.86[ASN][1000 genomes]
rs1147491	0.96[ASN][1000 genomes]
rs17144057	0.98[ASN][1000 genomes]
rs28764931	0.90[ASN][1000 genomes]
rs3213699	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608334	chr7:121670522-121725961	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121655600-121699000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:121663800-121705600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:121678400-121701800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:121682400-121716600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:121684400-121734400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:121685000-121772000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:121685200-121716800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:121685400-121725200	Weak transcription	NHEK	skin
11	chr7:121692200-121716800	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:121692400-121717200	Weak transcription	Brain Substantia Nigra	brain
13	chr7:121692600-121698400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:121693400-121700200	Weak transcription	Brain Germinal Matrix	brain
15	chr7:121694200-121698800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:121694200-121698800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:121694200-121699000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:121694200-121699200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:121694200-121699600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:121694200-121699800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:121694400-121726000	Weak transcription	Fetal Brain Male	brain
22	chr7:121695200-121698600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:121696000-121703400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:121696200-121697400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr7:121696400-121698000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:121696400-121700200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:121696800-121697400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
28	chr7:121696800-121697400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr7:121697000-121697400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
30	chr7:121697000-121697400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
31	chr7:121697000-121698400	Weak transcription	Fetal Brain Female	brain
32	chr7:121697200-121698200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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