Variant report

Variant	rs59008891
Chromosome Location	chr11:63257169-63257170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57819251	1.00[AMR][1000 genomes]
rs60484516	1.00[AMR][1000 genomes]
rs9943560	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv972926	chr11:63235663-63258845	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3364622	chr11:63247425-63274716	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63255800-63257200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63255800-63257600	Enhancers	Brain Hippocampus Middle	brain
3	chr11:63255800-63257600	Enhancers	Brain Substantia Nigra	brain
4	chr11:63256000-63257400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr11:63256000-63257800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:63256200-63257200	Weak transcription	HSMMtube	muscle
7	chr11:63256200-63257600	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:63256200-63257600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:63256400-63257200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:63256400-63257600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:63256400-63257600	Weak transcription	Brain Angular Gyrus	brain
12	chr11:63256600-63257600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:63256600-63257800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:63256600-63258000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:63256800-63257200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:63256800-63257200	Flanking Active TSS	Colon Smooth Muscle	Colon
17	chr11:63256800-63257200	Enhancers	HSMM	muscle
18	chr11:63256800-63257400	Enhancers	Adipose Nuclei	Adipose
19	chr11:63256800-63257600	Active TSS	H1 Cell Line	embryonic stem cell
20	chr11:63256800-63257800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:63256800-63257800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:63256800-63258200	Enhancers	Brain Germinal Matrix	brain
23	chr11:63257000-63257200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr11:63257000-63257400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr11:63257000-63257400	Enhancers	Hela-S3	cervix
26	chr11:63257000-63257600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr11:63257000-63257600	Enhancers	Brain Anterior Caudate	brain
28	chr11:63257000-63258000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr11:63257000-63258000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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