Variant report

Variant	rs59014890
Chromosome Location	chr2:21509092-21509093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21509037..21511127-chr2:21515004..21517680,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10185261	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10185535	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10192339	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10196906	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10199484	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10199765	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs21730	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs219505	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs219507	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs219508	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs219531	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs219532	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs219534	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs219535	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs219537	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs219538	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs219539	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs219540	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs380969	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs389795	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs390062	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs391070	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs399991	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs412558	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs418451	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs423277	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs439907	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55815563	0.81[EUR][1000 genomes]
rs55841071	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59020225	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59920883	0.81[EUR][1000 genomes]
rs61603728	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6704721	0.81[EUR][1000 genomes]
rs6708193	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7369047	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21493400-21511200	Weak transcription	Aorta	Aorta
2	chr2:21503200-21511800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:21505000-21511800	Weak transcription	Fetal Brain Male	brain
4	chr2:21505400-21510600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:21505400-21510600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:21505400-21511200	Weak transcription	Brain Anterior Caudate	brain
7	chr2:21505800-21511000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:21506400-21509400	Weak transcription	Right Atrium	heart
9	chr2:21506400-21510800	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:21506400-21511000	Weak transcription	Brain Substantia Nigra	brain
11	chr2:21506400-21511600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:21506600-21510600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:21506600-21510800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:21508200-21511200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr2:21509000-21509200	Enhancers	K562	blood

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