Variant report

Variant	rs590182
Chromosome Location	chr6:4156166-4156167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:4055445..4056340-chr6:4155713..4156846,7	MCF-7	breast:
2	chr6:4126407..4126951-chr6:4155837..4156533,2	MCF-7	breast:
3	chr6:4135262..4138010-chr6:4154199..4158052,5	K562	blood:
4	chr6:4133729..4136828-chr6:4155883..4158586,4	K562	blood:
5	chr6:4135013..4135838-chr6:4155830..4156680,2	K562	blood:
6	chr6:3748189..3748787-chr6:4155991..4156729,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf201-2	chr6:4155665-4158503	NONHSAT107330

No data

Variant related genes	Relation type
ENSG00000198721	Chromatin interaction
ENSG00000234817	Chromatin interaction
ENSG00000254821	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs583807	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs629533	0.82[JPT][hapmap]
rs653674	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs853422	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422231	chr6:4100333-4233454	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4155600-4156200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:4155800-4156200	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:4155800-4156200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr6:4155800-4156200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:4155800-4156200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:4155800-4156200	Enhancers	Brain Cingulate Gyrus	brain
7	chr6:4155800-4156200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:4155800-4156200	Enhancers	HepG2	liver
9	chr6:4155800-4156200	Enhancers	HMEC	breast
10	chr6:4155800-4156200	Enhancers	NHEK	skin
11	chr6:4155800-4156600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:4155800-4156800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:4156000-4156200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:4156000-4156200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:4156000-4156200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:4156000-4156200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr6:4156000-4156200	Enhancers	Brain Anterior Caudate	brain
18	chr6:4156000-4156200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:4156000-4156200	Enhancers	Colon Smooth Muscle	Colon
20	chr6:4156000-4156200	Enhancers	Fetal Thymus	thymus
21	chr6:4156000-4156200	Enhancers	Rectal Smooth Muscle	rectum
22	chr6:4156000-4156200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr6:4156000-4156200	Enhancers	A549	lung
24	chr6:4156000-4156200	Enhancers	Hela-S3	cervix
25	chr6:4156000-4156200	Flanking Active TSS	K562	blood
26	chr6:4156000-4156200	Enhancers	NH-A	brain
27	chr6:4156000-4156400	Enhancers	Primary T cells fromperipheralblood	blood
28	chr6:4156000-4156400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr6:4156000-4156400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr6:4156000-4156600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:4156000-4156600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:4156000-4158200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:4156000-4158200	Enhancers	Fetal Muscle Leg	muscle

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