Variant report

Variant	rs59026736
Chromosome Location	chr20:40904695-40904696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6102764	0.83[AMR][1000 genomes]
rs73254769	0.85[AMR][1000 genomes]
rs73257074	0.83[AMR][1000 genomes]
rs8121427	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40896600-40905400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:40901600-40905800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:40903200-40905000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:40903400-40908400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr20:40904200-40905600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr20:40904400-40905400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr20:40904400-40905400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr20:40904600-40904800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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