Variant report

Variant	rs59033446
Chromosome Location	chr15:52338114-52338115
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52333359..52335753-chr15:52337024..52338910,2	MCF-7	breast:
2	chr15:52327906..52330801-chr15:52336087..52340276,6	MCF-7	breast:
3	chr15:52310424..52313443-chr15:52334748..52338325,6	MCF-7	breast:
4	chr15:52332465..52334999-chr15:52337431..52339850,2	K562	blood:
5	chr15:52316174..52318031-chr15:52336524..52338315,2	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAPK6-12	chr15:52338027-52338405	NONHSAT043900
2	lnc-MAPK6-12	chr15:52338027-52338321	NONHSAT043902
3	lnc-MAPK6-12	chr15:52338027-52338571	NONHSAT043903
4	lnc-MAPK6-12	chr15:52338027-52338262	NONHSAT043896
5	lnc-MAPK6-12	chr15:52338027-52338306	NONHSAT043899
6	lnc-MAPK6-12	chr15:52338027-52338250	NONHSAT043905
7	lnc-MAPK6-12	chr15:52338027-52338508	NONHSAT043904

No data

Variant related genes	Relation type
ENSG00000259438	Chromatin interaction
ENSG00000069956	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7169510	1.00[AMR][1000 genomes]
rs73398739	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050664	chr15:52265723-52342101	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv530681	chr15:52297253-52390470	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv984198	chr15:52319726-52481137	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52312800-52345400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:52314400-52359800	Weak transcription	Fetal Brain Male	brain
3	chr15:52325800-52342200	Weak transcription	HUVEC	blood vessel
4	chr15:52326800-52342800	Weak transcription	Fetal Brain Female	brain
5	chr15:52327000-52340600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:52327600-52340200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:52332400-52348200	Weak transcription	Colonic Mucosa	Colon
8	chr15:52332600-52338200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:52332600-52340400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:52332600-52342400	Weak transcription	NHDF-Ad	bronchial
11	chr15:52332600-52349000	Weak transcription	Esophagus	oesophagus
12	chr15:52332600-52349400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:52332600-52350800	Weak transcription	Aorta	Aorta
14	chr15:52332600-52361800	Weak transcription	Gastric	stomach
15	chr15:52332800-52339600	Weak transcription	Fetal Intestine Large	intestine
16	chr15:52332800-52340400	Weak transcription	Brain Germinal Matrix	brain
17	chr15:52332800-52340400	Weak transcription	Placenta	Placenta
18	chr15:52332800-52344400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:52333000-52338200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:52333000-52338200	Weak transcription	Fetal Thymus	thymus
21	chr15:52333000-52338800	Weak transcription	NHLF	lung
22	chr15:52333000-52339000	Weak transcription	Fetal Intestine Small	intestine
23	chr15:52333000-52339000	Weak transcription	Fetal Lung	lung
24	chr15:52333000-52339000	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:52333000-52339200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:52333000-52339400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:52333000-52339600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:52333000-52340200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:52333000-52340400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:52333000-52341000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:52333000-52341000	Weak transcription	HSMM	muscle
32	chr15:52333000-52344200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:52333000-52344400	Weak transcription	Left Ventricle	heart
34	chr15:52333000-52345400	Weak transcription	Lung	lung
35	chr15:52333000-52348200	Weak transcription	HSMMtube	muscle
36	chr15:52333000-52350800	Weak transcription	Right Ventricle	heart
37	chr15:52333000-52351000	Weak transcription	Spleen	Spleen
38	chr15:52333200-52338400	Weak transcription	NH-A	brain
39	chr15:52333200-52338600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:52333200-52339600	Weak transcription	Fetal Stomach	stomach
41	chr15:52333200-52340800	Weak transcription	Adipose Nuclei	Adipose
42	chr15:52333200-52342800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr15:52333200-52348600	Weak transcription	Colon Smooth Muscle	Colon
44	chr15:52334000-52361400	Weak transcription	Small Intestine	intestine
45	chr15:52334200-52343800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:52334400-52338400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:52334400-52343000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:52334600-52338800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:52334600-52339000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:52334600-52339000	Weak transcription	Osteobl	bone

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