Variant report

Variant	rs590381
Chromosome Location	chr11:65710151-65710152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RXRA	chr11:65710022-65710341	HepG2	liver:	n/a	n/a
2	FOXA1	chr11:65710014-65710354	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65707684..65710207-chr11:65726207..65729046,2	MCF-7	breast:
2	chr11:65708763..65711558-chr11:65724262..65726531,2	MCF-7	breast:

Variant related genes	Relation type
TSGA10IP	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1143916	0.88[AFR][1000 genomes]
rs1144796	1.00[AFR][1000 genomes]
rs1151508	1.00[AFR][1000 genomes]
rs1201503	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
6	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
7	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
8	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
9	esv3444925	chr11:65687425-65714023	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65688800-65715000	Weak transcription	Right Atrium	heart
2	chr11:65699800-65712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:65700000-65712600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:65705600-65712200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:65705600-65712800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:65705800-65712800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:65709200-65710400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:65709200-65712400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:65709200-65712800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:65709200-65726000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:65709400-65710200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:65709400-65710200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr11:65709400-65710200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:65709400-65710400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:65709400-65710600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:65709400-65710800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:65709400-65711400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:65709400-65711600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:65709400-65712400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:65709400-65712800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:65709400-65712800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:65709400-65713200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr11:65709400-65717800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:65709600-65710400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr11:65709600-65710600	Enhancers	HepG2	liver
26	chr11:65709600-65711600	Weak transcription	Osteobl	bone
27	chr11:65710000-65710200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr11:65710000-65710400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:65710000-65710400	Enhancers	NHLF	lung

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