Variant report

Variant	rs59039239
Chromosome Location	chr21:46434173-46434174
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:46370739..46373198-chr21:46433814..46437051,3	K562	blood:
2	chr21:46423809..46428202-chr21:46432299..46434841,4	MCF-7	breast:
3	chr21:46432809..46434557-chr21:46475322..46477868,2	MCF-7	breast:
4	chr21:46425309..46428442-chr21:46432279..46434914,3	K562	blood:
5	chr21:46420509..46434696-chr21:46492036..46497081,20	K562	blood:
6	chr21:46432319..46434906-chr21:46450919..46453400,2	K562	blood:
7	chr21:46429385..46432262-chr21:46434093..46436321,2	MCF-7	breast:
8	chr21:46416275..46421174-chr21:46430809..46434600,6	MCF-7	breast:
9	chr21:46425041..46427306-chr21:46432208..46434970,3	MCF-7	breast:
10	chr21:46432300..46434724-chr21:46436959..46438911,2	MCF-7	breast:
11	chr21:46430208..46435737-chr21:46488782..46498414,10	MCF-7	breast:
12	chr21:46425009..46428704-chr21:46430699..46434755,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000224930	Chromatin interaction
ENSG00000235374	Chromatin interaction
ENSG00000268856	Chromatin interaction
ENSG00000197381	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57212419	1.00[EUR][1000 genomes]
rs57339712	1.00[EUR][1000 genomes]
rs57619688	1.00[EUR][1000 genomes]
rs58645077	1.00[EUR][1000 genomes]
rs61084677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61215574	1.00[EUR][1000 genomes]
rs61371515	1.00[EUR][1000 genomes]
rs7276484	1.00[EUR][1000 genomes]
rs7281130	1.00[EUR][1000 genomes]
rs73380541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73380566	1.00[EUR][1000 genomes]
rs73380569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73906949	1.00[EUR][1000 genomes]
rs73906951	1.00[EUR][1000 genomes]
rs73906952	1.00[EUR][1000 genomes]
rs73907234	1.00[EUR][1000 genomes]
rs73909914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8126844	1.00[EUR][1000 genomes]
rs8131832	1.00[EUR][1000 genomes]
rs8132122	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
2	nsv1056513	chr21:46254075-46442759	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv913969	chr21:46279505-46472929	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv913970	chr21:46305175-46487831	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv913975	chr21:46306161-46459432	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv913976	chr21:46306161-46487831	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv834110	chr21:46316183-46505151	Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
8	nsv913977	chr21:46335761-46454391	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv913978	chr21:46335761-46466674	Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv913979	chr21:46335761-46472929	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv913980	chr21:46337565-46454391	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv913984	chr21:46344426-46435610	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv913983	chr21:46344426-46440385	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv913985	chr21:46344426-46448142	Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
15	nsv913986	chr21:46344426-46466674	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
16	nsv913987	chr21:46344426-46472929	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
17	nsv913990	chr21:46356816-46448142	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
18	nsv913991	chr21:46356816-46472929	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
19	nsv913993	chr21:46376528-46448142	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
20	nsv913994	chr21:46376528-46454391	Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv913995	chr21:46376528-46466674	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
22	nsv913996	chr21:46383941-46459432	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
23	nsv913997	chr21:46383941-46472929	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
24	nsv913998	chr21:46393090-46441947	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
25	nsv587818	chr21:46396960-46448253	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
26	nsv526277	chr21:46408790-46440385	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
27	esv1834255	chr21:46408790-46472929	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
28	esv1838717	chr21:46408790-46472929	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46429600-46435400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr21:46429800-46434200	Enhancers	Placenta	Placenta
3	chr21:46430800-46434600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr21:46430800-46435000	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr21:46431800-46435200	Enhancers	Fetal Intestine Small	intestine
6	chr21:46431800-46436200	Enhancers	Fetal Intestine Large	intestine
7	chr21:46432000-46434200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr21:46432000-46436000	Flanking Active TSS	HepG2	liver
9	chr21:46432000-46438400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr21:46432200-46434800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr21:46432200-46435000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr21:46432400-46434800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr21:46432800-46434400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr21:46432800-46434400	Weak transcription	Brain Germinal Matrix	brain
15	chr21:46432800-46435600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr21:46432800-46438000	Weak transcription	Gastric	stomach
17	chr21:46432800-46438200	Weak transcription	Right Atrium	heart
18	chr21:46433000-46434200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr21:46433000-46434400	Enhancers	Osteobl	bone
20	chr21:46433000-46434600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr21:46433000-46434600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr21:46433000-46434800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr21:46433000-46435800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr21:46433000-46436400	Weak transcription	Left Ventricle	heart
25	chr21:46433000-46438000	Weak transcription	Psoas Muscle	Psoas
26	chr21:46433200-46435600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr21:46433200-46435600	Weak transcription	Spleen	Spleen
28	chr21:46433200-46436000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr21:46433200-46438000	Weak transcription	Lung	lung
30	chr21:46433200-46438200	Weak transcription	Aorta	Aorta
31	chr21:46433400-46434400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr21:46433400-46437000	Weak transcription	HSMM	muscle
33	chr21:46433400-46437400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr21:46433400-46437400	Weak transcription	Right Ventricle	heart
35	chr21:46433400-46438000	Weak transcription	Pancreas	Pancrea
36	chr21:46433600-46434200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr21:46433600-46434600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr21:46433600-46435600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr21:46433600-46436400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr21:46433600-46436400	Weak transcription	Esophagus	oesophagus
41	chr21:46433600-46436800	Weak transcription	HUVEC	blood vessel
42	chr21:46433600-46436800	Weak transcription	NH-A	brain
43	chr21:46433600-46437200	Weak transcription	HMEC	breast
44	chr21:46433600-46439200	Weak transcription	HSMMtube	muscle
45	chr21:46433800-46434200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr21:46433800-46434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr21:46433800-46434200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr21:46433800-46434200	Weak transcription	Fetal Thymus	thymus
49	chr21:46433800-46434400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr21:46433800-46435000	Weak transcription	Fetal Lung	lung

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