Variant report

Variant	rs59050266
Chromosome Location	chr5:74260538-74260539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59765240	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60623068	0.84[AFR][1000 genomes]
rs73124683	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74253600-74261400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:74253600-74269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:74254200-74262600	Weak transcription	Pancreas	Pancrea
4	chr5:74255000-74272600	Weak transcription	Gastric	stomach
5	chr5:74256000-74261800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:74259200-74261600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr5:74259600-74261600	Weak transcription	Fetal Intestine Small	intestine
8	chr5:74259800-74260800	Weak transcription	Stomach Mucosa	stomach
9	chr5:74259800-74261400	Weak transcription	Fetal Intestine Large	intestine
10	chr5:74259800-74262600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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