Variant report
Variant | rs590510 |
---|---|
Chromosome Location | chr1:194232277-194232278 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11805849 | 0.93[EUR][1000 genomes] |
rs167312 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs167314 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs167315 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16836467 | 0.93[EUR][1000 genomes] |
rs16836469 | 0.93[EUR][1000 genomes] |
rs16836471 | 0.93[EUR][1000 genomes] |
rs16836509 | 0.93[EUR][1000 genomes] |
rs215124 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2450536 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2450539 | 0.93[EUR][1000 genomes] |
rs2450541 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2477607 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2477612 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302210 | 1.00[EUR][1000 genomes] |
rs302211 | 0.93[EUR][1000 genomes] |
rs302212 | 1.00[EUR][1000 genomes] |
rs302213 | 0.93[EUR][1000 genomes] |
rs302214 | 0.87[EUR][1000 genomes] |
rs302216 | 0.93[EUR][1000 genomes] |
rs302217 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302220 | 0.93[EUR][1000 genomes] |
rs302222 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302223 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs302234 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302235 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302237 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302238 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302241 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs302242 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs302243 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302244 | 0.93[EUR][1000 genomes] |
rs302245 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs302246 | 0.93[EUR][1000 genomes] |
rs302247 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302248 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302250 | 0.93[EUR][1000 genomes] |
rs302251 | 0.93[EUR][1000 genomes] |
rs302252 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302255 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302259 | 0.93[EUR][1000 genomes] |
rs302260 | 0.93[EUR][1000 genomes] |
rs302261 | 0.93[EUR][1000 genomes] |
rs302263 | 0.93[EUR][1000 genomes] |
rs302265 | 0.93[EUR][1000 genomes] |
rs302267 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302268 | 0.82[EUR][1000 genomes] |
rs302269 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302280 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs302281 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs302282 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs302283 | 0.93[EUR][1000 genomes] |
rs302284 | 0.93[EUR][1000 genomes] |
rs41315551 | 1.00[EUR][1000 genomes] |
rs587990 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs588438 | 0.93[EUR][1000 genomes] |
rs589999 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs590482 | 0.93[EUR][1000 genomes] |
rs604436 | 0.82[EUR][1000 genomes] |
rs604918 | 0.82[EUR][1000 genomes] |
rs611155 | 0.93[EUR][1000 genomes] |
rs619161 | 0.93[EUR][1000 genomes] |
rs620738 | 0.93[EUR][1000 genomes] |
rs624059 | 0.87[EUR][1000 genomes] |
rs62641675 | 1.00[EUR][1000 genomes] |
rs642304 | 0.93[EUR][1000 genomes] |
rs652758 | 0.93[EUR][1000 genomes] |
rs654399 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs663671 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6678341 | 0.93[EUR][1000 genomes] |
rs668528 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs681933 | 0.93[EUR][1000 genomes] |
rs683253 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs683752 | 0.93[EUR][1000 genomes] |
rs685579 | 0.85[EUR][1000 genomes] |
rs686596 | 0.93[EUR][1000 genomes] |
rs686689 | 1.00[AMR][1000 genomes] |
rs688868 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs73070740 | 0.93[EUR][1000 genomes] |
rs73070746 | 0.93[EUR][1000 genomes] |
rs73070762 | 0.82[EUR][1000 genomes] |
rs73070763 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1008266 | chr1:193550185-194481053 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv872834 | chr1:193889533-194482304 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv1001872 | chr1:194030479-194288016 | Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv832181 | chr1:194089117-194255615 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1004338 | chr1:194143315-194381135 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv872838 | chr1:194206338-194412218 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv872839 | chr1:194206338-194420305 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv872840 | chr1:194221509-194320639 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv872841 | chr1:194221509-194329561 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | nsv872842 | chr1:194221509-194334907 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
11 | nsv872843 | chr1:194221509-194506982 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
12 | nsv872844 | chr1:194232033-194364661 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:194232000-194233600 | Weak transcription | Primary T cells from cord blood | blood |