Variant report

Variant	rs59061161
Chromosome Location	chr14:72672455-72672456
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1402057	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109000	0.92[EUR][1000 genomes]
rs17109096	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57597479	0.92[EUR][1000 genomes]
rs58722304	1.00[ASN][1000 genomes]
rs60179178	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574050	1.00[ASN][1000 genomes]
rs8006075	1.00[ASN][1000 genomes]
rs847283	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs847284	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs847285	1.00[ASN][1000 genomes]
rs847286	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs847290	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs847292	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs847293	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs847294	1.00[ASN][1000 genomes]
rs847295	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs847296	1.00[ASN][1000 genomes]
rs847298	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72653600-72683000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:72671600-72674800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72672200-72679400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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