Variant report

Variant	rs59063378
Chromosome Location	chr6:56409834-56409835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56409064..56410806-chr6:56424133..56426193,2	K562	blood:
2	chr6:56408981..56412253-chr6:56415239..56417908,3	K562	blood:
3	chr6:56405751..56407545-chr6:56409347..56411136,2	MCF-7	breast:
4	chr6:56333512..56335429-chr6:56408876..56410830,2	K562	blood:
5	chr6:56302630..56305077-chr6:56407760..56410392,2	MCF-7	breast:
6	chr6:56406998..56408822-chr6:56409621..56411891,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151914	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17830661	1.00[AFR][1000 genomes]
rs4585566	0.92[AFR][1000 genomes]
rs56273018	0.87[AFR][1000 genomes]
rs56851245	0.87[AFR][1000 genomes]
rs57822928	0.84[AFR][1000 genomes]
rs58633665	0.92[AFR][1000 genomes]
rs59948116	0.92[AFR][1000 genomes]
rs61022845	0.83[AFR][1000 genomes]
rs73455767	0.84[AFR][1000 genomes]
rs73455782	0.87[AFR][1000 genomes]
rs73455787	0.91[AFR][1000 genomes]
rs73745841	0.82[AFR][1000 genomes]
rs73745842	0.87[AFR][1000 genomes]
rs73749957	0.92[AFR][1000 genomes]
rs73749958	0.92[AFR][1000 genomes]
rs73749960	0.92[AFR][1000 genomes]
rs73749980	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv885912	chr6:56327849-56458836	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1016868	chr6:56376165-56417631	Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56408200-56411800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:56408200-56412800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:56408200-56413000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:56408200-56413400	Weak transcription	NHLF	lung
5	chr6:56408200-56414600	Weak transcription	Aorta	Aorta
6	chr6:56408200-56415200	Weak transcription	Right Atrium	heart
7	chr6:56408200-56415400	Weak transcription	Ovary	ovary
8	chr6:56408200-56416200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:56408200-56416600	Weak transcription	Left Ventricle	heart
10	chr6:56408200-56416800	Weak transcription	Brain Germinal Matrix	brain
11	chr6:56408200-56416800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:56408200-56417000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:56408200-56417000	Weak transcription	Fetal Brain Female	brain
14	chr6:56408200-56417200	Weak transcription	Fetal Brain Male	brain
15	chr6:56408200-56417400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:56408200-56419400	Weak transcription	Placenta	Placenta
17	chr6:56408200-56419800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:56408200-56440400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:56408200-56440600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:56408200-56496000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:56408400-56410000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:56408400-56411600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:56408400-56412000	Weak transcription	Psoas Muscle	Psoas
24	chr6:56408400-56412800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:56408400-56413000	Weak transcription	Fetal Intestine Large	intestine
26	chr6:56408400-56413200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:56408400-56413800	Weak transcription	HUVEC	blood vessel
28	chr6:56408400-56414200	Weak transcription	GM12878-XiMat	blood
29	chr6:56408400-56414800	Weak transcription	Adipose Nuclei	Adipose
30	chr6:56408400-56415600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:56408400-56416200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:56408400-56416200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:56408400-56416200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:56408400-56416400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:56408400-56416600	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:56408400-56416800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:56408400-56416800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:56408400-56416800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:56408400-56416800	Weak transcription	Fetal Stomach	stomach
40	chr6:56408400-56417400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:56408400-56417400	Weak transcription	HMEC	breast
42	chr6:56408400-56430800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:56408600-56410400	Weak transcription	Fetal Intestine Small	intestine
44	chr6:56408600-56411800	Weak transcription	Liver	Liver
45	chr6:56408600-56415200	Weak transcription	HSMMtube	muscle
46	chr6:56408600-56417200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:56408600-56417400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:56409000-56410000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr6:56409000-56410200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:56409000-56410400	Weak transcription	HSMM	muscle

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