Variant report

Variant	rs59066674
Chromosome Location	chr13:80372965-80372966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2760109	1.00[EUR][1000 genomes]
rs2760110	1.00[EUR][1000 genomes]
rs2760112	1.00[EUR][1000 genomes]
rs3850058	1.00[AMR][1000 genomes]
rs3915710	1.00[AMR][1000 genomes]
rs56694449	1.00[AMR][1000 genomes]
rs57864422	1.00[EUR][1000 genomes]
rs60305421	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7333058	1.00[EUR][1000 genomes]
rs73553466	1.00[AMR][1000 genomes]
rs9593410	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80367800-80377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:80369400-80373400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:80370800-80373400	Weak transcription	HSMM	muscle
4	chr13:80371200-80373200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:80371800-80373800	Enhancers	NHDF-Ad	bronchial
6	chr13:80372000-80374200	Enhancers	HSMMtube	muscle
7	chr13:80372400-80373200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:80372600-80373600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:80372600-80374200	Enhancers	Fetal Heart	heart
10	chr13:80372800-80373000	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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