Variant report
| Variant | rs59067409 |
|---|---|
| Chromosome Location | chr4:22774181-22774182 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:22772449..22775297-chr4:22778279..22780984,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1485825 | 1.00[AMR][1000 genomes] |
| rs2011996 | 1.00[AMR][1000 genomes] |
| rs3929303 | 1.00[AMR][1000 genomes] |
| rs4306940 | 1.00[AMR][1000 genomes] |
| rs57172857 | 1.00[AMR][1000 genomes] |
| rs57405986 | 1.00[AMR][1000 genomes] |
| rs57470151 | 1.00[AMR][1000 genomes] |
| rs57658078 | 1.00[AMR][1000 genomes] |
| rs60010975 | 1.00[AMR][1000 genomes] |
| rs60522537 | 1.00[AMR][1000 genomes] |
| rs60781176 | 1.00[AMR][1000 genomes] |
| rs60968974 | 1.00[AMR][1000 genomes] |
| rs61323956 | 1.00[AMR][1000 genomes] |
| rs61573992 | 1.00[AMR][1000 genomes] |
| rs6840706 | 1.00[AMR][1000 genomes] |
| rs73115108 | 1.00[AMR][1000 genomes] |
| rs73115134 | 1.00[AMR][1000 genomes] |
| rs73117146 | 1.00[AMR][1000 genomes] |
| rs73117148 | 1.00[AMR][1000 genomes] |
| rs73117152 | 1.00[AMR][1000 genomes] |
| rs73117153 | 1.00[AMR][1000 genomes] |
| rs73117155 | 1.00[AMR][1000 genomes] |
| rs73117157 | 1.00[AMR][1000 genomes] |
| rs73117160 | 1.00[AMR][1000 genomes] |
| rs73117161 | 1.00[AMR][1000 genomes] |
| rs73117164 | 1.00[AMR][1000 genomes] |
| rs73117169 | 1.00[AMR][1000 genomes] |
| rs73117177 | 1.00[AMR][1000 genomes] |
| rs73117181 | 1.00[AMR][1000 genomes] |
| rs73117194 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349061 | chr4:22379581-22887563 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv821634 | chr4:22427074-22865948 | Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv829883 | chr4:22666326-22842517 | Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1005733 | chr4:22747306-22833517 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:22769400-22821200 | Weak transcription | Duodenum Mucosa | Duodenum |
| 2 | chr4:22771400-22779400 | Weak transcription | Liver | Liver |
