Variant report

Variant	rs59074037
Chromosome Location	chr2:173509987-173509988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16860762	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16860768	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16860769	0.86[EUR][1000 genomes]
rs55967205	0.86[EUR][1000 genomes]
rs57566649	0.84[AFR][1000 genomes]
rs58329616	0.86[EUR][1000 genomes]
rs58576752	0.86[EUR][1000 genomes]
rs6736977	0.81[AMR][1000 genomes]
rs73040802	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73042913	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73042916	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73977622	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73977647	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2762962	chr2:173493078-173527311	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173494600-173510200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:173499800-173513000	Weak transcription	Pancreas	Pancrea
3	chr2:173505000-173512000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:173505200-173511200	Weak transcription	NHDF-Ad	bronchial
5	chr2:173505400-173512000	Weak transcription	HSMM	muscle
6	chr2:173507000-173510800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:173508200-173510000	Enhancers	HepG2	liver
8	chr2:173508200-173511800	Weak transcription	Osteobl	bone
9	chr2:173508400-173511600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:173508600-173511800	Weak transcription	HMEC	breast
11	chr2:173508600-173511800	Weak transcription	NH-A	brain
12	chr2:173508600-173512000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:173508800-173512000	Weak transcription	NHEK	skin
14	chr2:173509200-173510400	Weak transcription	NHLF	lung
15	chr2:173509200-173519400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:173509400-173510400	Weak transcription	Fetal Stomach	stomach
17	chr2:173509600-173511800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:173509800-173510200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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