Variant report

Variant	rs59077533
Chromosome Location	chr7:111682988-111682989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52529863..52532284-chr7:111681323..111683323,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17159177	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56031125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60585632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60589023	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6943599	0.86[AFR][1000 genomes]
rs73432719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432731	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432735	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432737	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7780217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7780545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608196	chr7:111073710-111794368	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1015267	chr7:111303294-111714771	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539087	chr7:111303294-111714771	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539088	chr7:111333899-111722341	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv533924	chr7:111529515-111784369	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv1023261	chr7:111593889-111780337	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv1016663	chr7:111622107-111813223	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv1034249	chr7:111656902-111748774	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv539089	chr7:111656902-111748774	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv889054	chr7:111666943-111739842	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111669200-111683000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:111673400-111689600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:111675200-111683000	Weak transcription	Lung	lung
4	chr7:111675200-111684200	Weak transcription	Psoas Muscle	Psoas
5	chr7:111675800-111683200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:111677000-111693800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:111677400-111686600	Weak transcription	Left Ventricle	heart
8	chr7:111678800-111683400	Weak transcription	Brain Anterior Caudate	brain
9	chr7:111678800-111687800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:111678800-111701200	Weak transcription	Right Atrium	heart
11	chr7:111679000-111689600	Weak transcription	Liver	Liver
12	chr7:111680400-111684800	Weak transcription	Aorta	Aorta
13	chr7:111680600-111685800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr7:111681400-111693200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:111682200-111683000	Strong transcription	HUVEC	blood vessel
16	chr7:111682200-111684800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:111682400-111683200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:111682400-111684200	Enhancers	Brain Substantia Nigra	brain
19	chr7:111682600-111683800	Enhancers	Brain Hippocampus Middle	brain
20	chr7:111682600-111684000	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr7:111682600-111684400	Enhancers	Brain Cingulate Gyrus	brain
22	chr7:111682800-111683800	Enhancers	Fetal Lung	lung
23	chr7:111682800-111685200	Enhancers	Brain Angular Gyrus	brain

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