Variant report

Variant	rs59080418
Chromosome Location	chr5:79534965-79534966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79476108..79478145-chr5:79532399..79535168,2	MCF-7	breast:
2	chr5:79533016..79538413-chr5:79547668..79554494,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59785286	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73770707	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774233	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79500000-79537600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:79509800-79535600	Weak transcription	Primary B cells from cord blood	blood
3	chr5:79517000-79536400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:79517000-79536600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:79521400-79536200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr5:79525800-79535400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:79527800-79538600	Weak transcription	HepG2	liver
8	chr5:79530400-79537600	Weak transcription	K562	blood
9	chr5:79531600-79536000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:79531800-79536600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:79532200-79535400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:79532400-79537200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr5:79532600-79537600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr5:79533000-79536000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:79533000-79536600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr5:79533000-79537400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr5:79533200-79536800	Enhancers	Fetal Muscle Trunk	muscle
18	chr5:79533200-79536800	Enhancers	Fetal Muscle Leg	muscle
19	chr5:79533400-79535600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:79533400-79535800	Enhancers	Primary T cells from cord blood	blood
21	chr5:79533400-79536400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:79533400-79537400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr5:79533600-79535000	Enhancers	Fetal Brain Male	brain
24	chr5:79534000-79535200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:79534000-79535200	Enhancers	Fetal Intestine Large	intestine
26	chr5:79534000-79535800	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr5:79534000-79536200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:79534000-79536200	Enhancers	Placenta	Placenta
29	chr5:79534000-79536200	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr5:79534000-79536600	Enhancers	Ovary	ovary
31	chr5:79534000-79536600	Enhancers	NHDF-Ad	bronchial
32	chr5:79534000-79536800	Enhancers	Fetal Thymus	thymus
33	chr5:79534000-79537000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr5:79534200-79535000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr5:79534200-79535200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr5:79534200-79535600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr5:79534200-79536000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr5:79534200-79536000	Enhancers	Psoas Muscle	Psoas
39	chr5:79534200-79536200	Enhancers	H1 Cell Line	embryonic stem cell
40	chr5:79534200-79536200	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr5:79534200-79536200	Enhancers	Fetal Kidney	kidney
42	chr5:79534200-79536400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr5:79534200-79536600	Enhancers	Fetal Stomach	stomach
44	chr5:79534200-79536600	Enhancers	NH-A	brain
45	chr5:79534200-79536800	Enhancers	Primary hematopoietic stem cells	blood
46	chr5:79534200-79536800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr5:79534200-79536800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr5:79534200-79536800	Enhancers	Liver	Liver
49	chr5:79534200-79536800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr5:79534200-79536800	Enhancers	Thymus	Thymus

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