Variant report
| Variant | rs59080960 |
|---|---|
| Chromosome Location | chr12:41744988-41744989 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs12310611 | 1.00[EUR][1000 genomes] |
| rs17129305 | 1.00[EUR][1000 genomes] |
| rs1918224 | 1.00[EUR][1000 genomes] |
| rs56017096 | 1.00[EUR][1000 genomes] |
| rs56290808 | 1.00[EUR][1000 genomes] |
| rs57395098 | 1.00[EUR][1000 genomes] |
| rs57534395 | 1.00[EUR][1000 genomes] |
| rs57596398 | 1.00[EUR][1000 genomes] |
| rs57905058 | 1.00[EUR][1000 genomes] |
| rs58152936 | 1.00[EUR][1000 genomes] |
| rs58573939 | 1.00[EUR][1000 genomes] |
| rs58740899 | 1.00[EUR][1000 genomes] |
| rs59508383 | 1.00[EUR][1000 genomes] |
| rs59662716 | 1.00[EUR][1000 genomes] |
| rs59834004 | 1.00[EUR][1000 genomes] |
| rs60954648 | 1.00[EUR][1000 genomes] |
| rs61065876 | 1.00[EUR][1000 genomes] |
| rs61200818 | 1.00[EUR][1000 genomes] |
| rs73274484 | 1.00[EUR][1000 genomes] |
| rs74077504 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74077541 | 1.00[EUR][1000 genomes] |
| rs74077549 | 1.00[EUR][1000 genomes] |
| rs74077579 | 1.00[EUR][1000 genomes] |
| rs74077585 | 1.00[EUR][1000 genomes] |
| rs74077591 | 1.00[EUR][1000 genomes] |
| rs74077803 | 1.00[EUR][1000 genomes] |
| rs74078811 | 1.00[EUR][1000 genomes] |
| rs74078815 | 1.00[EUR][1000 genomes] |
| rs74078816 | 1.00[EUR][1000 genomes] |
| rs74078827 | 1.00[EUR][1000 genomes] |
| rs74078828 | 1.00[EUR][1000 genomes] |
| rs74078833 | 1.00[EUR][1000 genomes] |
| rs74078836 | 1.00[EUR][1000 genomes] |
| rs74078838 | 1.00[EUR][1000 genomes] |
| rs74078839 | 1.00[EUR][1000 genomes] |
| rs74078840 | 1.00[EUR][1000 genomes] |
| rs74078841 | 1.00[EUR][1000 genomes] |
| rs74078844 | 1.00[EUR][1000 genomes] |
| rs74078850 | 1.00[EUR][1000 genomes] |
| rs74078852 | 1.00[EUR][1000 genomes] |
| rs74078861 | 1.00[EUR][1000 genomes] |
| rs74079517 | 1.00[EUR][1000 genomes] |
| rs7973520 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832383 | chr12:41693298-41846934 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:41741200-41749400 | Weak transcription | Brain Germinal Matrix | brain |
