Variant report

Variant	rs59089242
Chromosome Location	chr4:119900174-119900175
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119899594..119901256-chr4:120219092..120221109,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12642839	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12644954	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12711068	0.80[ASN][1000 genomes]
rs13102598	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13103225	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1903109	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28397961	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9307465	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119893600-119901400	Weak transcription	Ovary	ovary
2	chr4:119893600-119902600	Weak transcription	Right Atrium	heart
3	chr4:119896400-119907600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:119896600-119901400	Weak transcription	Psoas Muscle	Psoas
5	chr4:119896600-119902000	Weak transcription	NH-A	brain
6	chr4:119896800-119901400	Weak transcription	Left Ventricle	heart
7	chr4:119896800-119901400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:119896800-119902200	Weak transcription	NHLF	lung
9	chr4:119896800-119903600	Weak transcription	Right Ventricle	heart
10	chr4:119897000-119900200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:119897000-119901400	Weak transcription	Aorta	Aorta
12	chr4:119897000-119901600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:119897000-119901800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:119897000-119902000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:119897000-119902000	Weak transcription	Fetal Heart	heart
16	chr4:119897000-119902000	Weak transcription	HSMMtube	muscle
17	chr4:119897000-119902000	Weak transcription	NHDF-Ad	bronchial
18	chr4:119897000-119902200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:119897000-119902200	Weak transcription	HSMM	muscle
20	chr4:119897200-119901600	Weak transcription	Osteobl	bone
21	chr4:119898400-119902400	Weak transcription	Fetal Stomach	stomach
22	chr4:119898800-119901800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr4:119899000-119901400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:119899200-119900200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr4:119899400-119900600	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:119900000-119900600	Enhancers	HMEC	breast
27	chr4:119900000-119900800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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