Variant report

Variant	rs59092876
Chromosome Location	chr9:16198363-16198364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16934229	0.85[AFR][1000 genomes]
rs73423627	0.86[AFR][1000 genomes]
rs73423628	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16193600-16202000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16193600-16202200	Weak transcription	NHLF	lung
3	chr9:16193800-16202000	Weak transcription	A549	lung
4	chr9:16196000-16198400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:16196000-16198800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:16196000-16199800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:16196200-16198400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:16196400-16198400	Enhancers	HSMM	muscle
9	chr9:16196600-16198800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:16196600-16198800	Enhancers	Fetal Stomach	stomach
11	chr9:16196600-16198800	Enhancers	Left Ventricle	heart
12	chr9:16196800-16199000	Enhancers	Rectal Smooth Muscle	rectum
13	chr9:16196800-16202000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:16197000-16201400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:16197200-16198600	Flanking Active TSS	HSMMtube	muscle
16	chr9:16197200-16201800	Weak transcription	NHDF-Ad	bronchial
17	chr9:16197400-16198800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:16197400-16199400	Weak transcription	Aorta	Aorta
19	chr9:16197600-16198400	Active TSS	Colon Smooth Muscle	Colon
20	chr9:16197600-16202600	Weak transcription	Fetal Lung	lung
21	chr9:16197600-16207200	Weak transcription	Ovary	ovary
22	chr9:16197800-16198400	Active TSS	Psoas Muscle	Psoas
23	chr9:16197800-16198400	Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr9:16198000-16198400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:16198000-16202000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:16198200-16198400	Enhancers	Fetal Kidney	kidney
27	chr9:16198200-16198400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr9:16198200-16198400	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr9:16198200-16202000	Weak transcription	NH-A	brain
30	chr9:16198200-16202200	Weak transcription	Osteobl	bone
31	chr9:16198200-16203000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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