Variant report

Variant	rs59095829
Chromosome Location	chr2:178225685-178225686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12105484	1.00[AMR][1000 genomes]
rs56852286	1.00[AMR][1000 genomes]
rs58052292	1.00[AMR][1000 genomes]
rs59548243	1.00[AMR][1000 genomes]
rs6721316	1.00[AMR][1000 genomes]
rs73035177	1.00[AMR][1000 genomes]
rs73035178	1.00[AMR][1000 genomes]
rs73037010	1.00[AMR][1000 genomes]
rs73037019	1.00[AMR][1000 genomes]
rs73037021	1.00[AMR][1000 genomes]
rs73039045	1.00[AMR][1000 genomes]
rs73039050	1.00[AMR][1000 genomes]
rs73039052	1.00[AMR][1000 genomes]
rs73039078	1.00[AMR][1000 genomes]
rs73039081	1.00[AMR][1000 genomes]
rs73039084	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3051	chr2:178193436-178239394	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv962042	chr2:178220899-178232397	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178203400-178244400	Weak transcription	HSMM	muscle
2	chr2:178214400-178228200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:178218000-178256200	Weak transcription	HepG2	liver
4	chr2:178219200-178233600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:178221600-178240600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:178224000-178226000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:178224800-178225800	Enhancers	Adipose Nuclei	Adipose
8	chr2:178224800-178226400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr2:178225000-178225800	Enhancers	Fetal Muscle Leg	muscle
10	chr2:178225000-178228600	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:178225200-178226000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr2:178225400-178225800	Enhancers	Ovary	ovary
13	chr2:178225400-178225800	Enhancers	Stomach Smooth Muscle	stomach
14	chr2:178225400-178226400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:178225600-178226600	Weak transcription	Fetal Stomach	stomach
16	chr2:178225600-178226800	Weak transcription	Fetal Heart	heart
17	chr2:178225600-178231800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr2:178225600-178233000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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