Variant report

Variant	rs59111775
Chromosome Location	chr21:28157630-28157631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2830517	1.00[AMR][1000 genomes]
rs2830521	1.00[AMR][1000 genomes]
rs2830526	1.00[AMR][1000 genomes]
rs73898761	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066573	chr21:28096356-28374354	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1057400	chr21:28104936-28359948	Strong transcription Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28154200-28161200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr21:28155000-28160800	Weak transcription	Aorta	Aorta
3	chr21:28155200-28158000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr21:28155200-28161200	Weak transcription	Adipose Nuclei	Adipose
5	chr21:28156000-28161200	Weak transcription	Fetal Stomach	stomach
6	chr21:28156200-28158200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr21:28156200-28168200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr21:28156400-28161200	Weak transcription	Fetal Lung	lung
9	chr21:28156600-28158400	Enhancers	Ovary	ovary
10	chr21:28157400-28158400	Enhancers	Colon Smooth Muscle	Colon
11	chr21:28157600-28157800	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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