Variant report

Variant	rs59113157
Chromosome Location	chr2:205459161-205459162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10932076	0.83[AFR][1000 genomes]
rs11885318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11890980	0.84[AFR][1000 genomes]
rs11892599	0.90[AFR][1000 genomes]
rs12052242	0.83[AFR][1000 genomes]
rs55970367	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57675666	1.00[AFR][1000 genomes]
rs57940164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61049352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61084963	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6743282	0.96[AFR][1000 genomes]
rs73057273	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057289	0.92[AFR][1000 genomes]
rs73984233	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7557006	0.96[AFR][1000 genomes]
rs7575842	0.87[AFR][1000 genomes]
rs9752333	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205455000-205459600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:205455000-205459800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:205455400-205459200	Weak transcription	Psoas Muscle	Psoas
4	chr2:205457000-205459200	Weak transcription	Adipose Nuclei	Adipose
5	chr2:205457000-205460000	Weak transcription	Left Ventricle	heart
6	chr2:205457000-205461400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:205458400-205459400	Enhancers	Colon Smooth Muscle	Colon
8	chr2:205458800-205459200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:205458800-205459200	Enhancers	Brain Substantia Nigra	brain
10	chr2:205458800-205459400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:205458800-205459400	Enhancers	Brain Hippocampus Middle	brain
12	chr2:205458800-205459400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr2:205458800-205460200	Enhancers	Brain Anterior Caudate	brain
14	chr2:205459000-205459400	Enhancers	Brain Cingulate Gyrus	brain
15	chr2:205459000-205459400	Enhancers	Brain Germinal Matrix	brain
16	chr2:205459000-205460000	Weak transcription	Right Ventricle	heart
17	chr2:205459000-205461400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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