Variant report

Variant	rs59115621
Chromosome Location	chr10:3945021-3945022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3943337..3946005-chr10:3946787..3950524,4	MCF-7	breast:
2	chr10:3939755..3941410-chr10:3943095..3945222,3	MCF-7	breast:
3	chr10:3826627..3829681-chr10:3942225..3946660,5	MCF-7	breast:
4	chr10:3826281..3830037-chr10:3944764..3947046,4	K562	blood:
5	chr10:3943704..3946639-chr10:3966037..3969024,2	K562	blood:
6	chr10:3826281..3828393-chr10:3944764..3946442,2	K562	blood:
7	chr10:3928981..3931961-chr10:3943935..3945468,2	MCF-7	breast:
8	chr10:3822440..3824387-chr10:3944239..3946236,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11252182	1.00[EUR][1000 genomes]
rs11252183	1.00[EUR][1000 genomes]
rs12248638	1.00[EUR][1000 genomes]
rs12260763	1.00[EUR][1000 genomes]
rs12267456	1.00[EUR][1000 genomes]
rs61367393	1.00[EUR][1000 genomes]
rs74114000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3928200-3981400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:3930600-3948800	Weak transcription	Fetal Lung	lung
3	chr10:3936400-3950600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:3941800-3945200	Weak transcription	Esophagus	oesophagus
5	chr10:3941800-3945400	Weak transcription	Pancreas	Pancrea
6	chr10:3942800-3945400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:3942800-3948400	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:3943400-3945600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:3943600-3945600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr10:3943800-3945200	Enhancers	A549	lung
11	chr10:3943800-3945600	Enhancers	Primary hematopoietic stem cells	blood
12	chr10:3943800-3945600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:3944000-3945400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:3944000-3945400	Enhancers	Fetal Heart	heart
15	chr10:3944000-3945400	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:3944000-3945600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:3944000-3945600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:3944000-3945600	Enhancers	Fetal Intestine Large	intestine
19	chr10:3944000-3945600	Enhancers	NHEK	skin
20	chr10:3944000-3948200	Enhancers	Primary B cells from cord blood	blood
21	chr10:3944200-3945400	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr10:3944200-3945400	Enhancers	HMEC	breast
23	chr10:3944200-3945600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:3944200-3945600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:3944200-3945600	Enhancers	Fetal Intestine Small	intestine
26	chr10:3944200-3945600	Enhancers	HepG2	liver
27	chr10:3944400-3945400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:3944400-3945400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:3944400-3945400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr10:3944400-3945400	Enhancers	HSMMtube	muscle
31	chr10:3944400-3945600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:3944400-3945600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:3944400-3945600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr10:3944400-3945600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr10:3944400-3945600	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr10:3944400-3945600	Enhancers	Stomach Smooth Muscle	stomach
37	chr10:3944400-3945600	Enhancers	NHDF-Ad	bronchial
38	chr10:3944600-3945400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:3944600-3945400	Enhancers	Adipose Nuclei	Adipose
40	chr10:3944600-3945400	Enhancers	Duodenum Mucosa	Duodenum
41	chr10:3944600-3945600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:3944600-3945600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:3944600-3945600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:3944600-3945600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr10:3944600-3945600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:3944600-3945600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:3944600-3945600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:3944600-3945600	Enhancers	Lung	lung
49	chr10:3944600-3945600	Enhancers	Right Atrium	heart
50	chr10:3944600-3945600	Enhancers	HSMM	muscle

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