Variant report

Variant	rs5912437
Chromosome Location	chrX:79826421-79826422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1113265	0.82[CEU][hapmap];0.89[LWK][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap]
rs11796018	0.88[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap]
rs12556865	0.88[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs1494481	0.82[CEU][hapmap];0.82[YRI][hapmap]
rs2088057	0.82[CEU][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.82[YRI][hapmap]
rs2137444	1.00[YRI][hapmap]
rs28417201	0.88[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap]
rs3106407	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs3122406	0.88[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap]
rs3810676	0.82[JPT][hapmap]
rs3923574	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs4240018	0.94[CEU][hapmap]
rs5913258	0.82[CEU][hapmap];0.89[LWK][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap]
rs7049509	0.88[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap]
rs7059257	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916218	chrX:79377399-80230929	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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