Variant report

Variant	rs59124672
Chromosome Location	chr4:103340950-103340951
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103264289..103267173-chr4:103340178..103342964,2	MCF-7	breast:
2	chr4:103339972..103342129-chr4:103346957..103349862,2	MCF-7	breast:
3	chr4:103339552..103341633-chr4:103343792..103346168,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MANBA-1	chr4:103340854-103340951	ENSG00000248161.1
2	lnc-MANBA-1	chr4:103340854-103340951	ENSG00000248161.1
3	lnc-MANBA-1	chr4:103340854-103340951	ENSG00000248161.1
4	lnc-NFKB1-3	chr4:103340854-103340950	NONHSAT097586

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55804949	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58614954	0.92[EUR][1000 genomes]
rs72930230	0.92[EUR][1000 genomes]
rs72930232	0.92[EUR][1000 genomes]
rs73834798	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73834800	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73834802	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73837203	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73837204	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73837206	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7691813	0.92[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103325000-103341600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:103337800-103349800	Weak transcription	NHEK	skin
3	chr4:103338000-103342200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:103338400-103341600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:103340600-103342200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links