Variant report

Variant	rs59135045
Chromosome Location	chr6:36718461-36718462
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36703852..36706817-chr6:36717625..36719969,2	K562	blood:
2	chr6:36717692..36718483-chr6:36726667..36727520,2	K562	blood:
3	chr6:36577343..36580259-chr6:36718203..36721182,2	MCF-7	breast:
4	chr6:36572662..36574979-chr6:36718444..36721087,2	K562	blood:
5	chr6:36645102..36656546-chr6:36717974..36730993,29	MCF-7	breast:
6	chr6:36710180..36712510-chr6:36716987..36718768,2	K562	blood:
7	chr6:36716404..36719581-chr6:36720288..36722523,3	MCF-7	breast:
8	chr6:36717988..36719917-chr6:36723476..36726910,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000220349	Chromatin interaction
ENSG00000124772	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57390286	1.00[AMR][1000 genomes]
rs59322472	1.00[AMR][1000 genomes]
rs6917167	1.00[AMR][1000 genomes]
rs73414220	1.00[AMR][1000 genomes]
rs73414222	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv885809	chr6:36687518-36719079	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv885811	chr6:36695223-36719079	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv885814	chr6:36704807-36722842	Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv602951	chr6:36706157-36719079	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36704000-36720400	Weak transcription	Right Ventricle	heart
2	chr6:36708400-36720800	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr6:36709200-36727000	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:36711800-36719800	Weak transcription	Gastric	stomach
5	chr6:36712600-36719000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:36713400-36718800	Weak transcription	Colonic Mucosa	Colon
7	chr6:36716000-36719600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:36716800-36719000	Strong transcription	Primary B cells from cord blood	blood
9	chr6:36717600-36721800	Enhancers	Stomach Mucosa	stomach
10	chr6:36717800-36718600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:36717800-36718600	ZNF genes & repeats	Spleen	Spleen
12	chr6:36718000-36718600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:36718000-36718600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
14	chr6:36718000-36718600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:36718000-36718800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:36718000-36719200	Enhancers	Esophagus	oesophagus
17	chr6:36718000-36719200	ZNF genes & repeats	Fetal Muscle Leg	muscle
18	chr6:36718000-36720600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:36718200-36718800	ZNF genes & repeats	Fetal Stomach	stomach
20	chr6:36718200-36721000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:36718200-36722200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:36718400-36718600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
23	chr6:36718400-36718600	Enhancers	Fetal Intestine Large	intestine
24	chr6:36718400-36718600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
25	chr6:36718400-36719800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:36718400-36720600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:36718400-36720600	Enhancers	HMEC	breast
28	chr6:36718400-36721000	Weak transcription	Right Atrium	heart
29	chr6:36718400-36723400	Enhancers	Duodenum Mucosa	Duodenum
30	chr6:36718400-36723400	Enhancers	NHEK	skin

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