Variant report

Variant	rs59138620
Chromosome Location	chr6:36034985-36034986
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36026222..36029241-chr6:36033953..36037841,5	K562	blood:
2	chr6:36033505..36035161-chr6:36036109..36038565,2	MCF-7	breast:
3	chr6:35994229..35997091-chr6:36033506..36037516,3	MCF-7	breast:
4	chr6:36027000..36029241-chr6:36033953..36035939,2	K562	blood:
5	chr6:36034762..36037596-chr6:36039909..36042459,2	K562	blood:
6	chr6:36034469..36036807-chr6:36067746..36069264,2	K562	blood:
7	chr6:35886740..35889116-chr6:36034106..36035615,2	MCF-7	breast:
8	chr6:36019349..36024573-chr6:36034890..36038920,5	K562	blood:
9	chr6:36030814..36032479-chr6:36033998..36035590,2	K562	blood:
10	chr6:35995272..35997299-chr6:36031658..36035597,3	K562	blood:
11	chr6:35993717..35997299-chr6:36030418..36035597,4	K562	blood:
12	chr6:36030964..36032479-chr6:36032885..36035498,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000096063	Chromatin interaction
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2269565	1.00[AMR][1000 genomes]
rs41270092	1.00[AMR][1000 genomes]
rs61763109	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61764189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61764191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940960	1.00[AMR][1000 genomes]
rs7341337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36006400-36039800	Weak transcription	Esophagus	oesophagus
2	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:36020400-36047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:36023000-36047400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:36028200-36046000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:36028200-36046600	Weak transcription	Fetal Stomach	stomach
8	chr6:36028200-36047200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:36028200-36047800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:36028200-36048400	Weak transcription	Fetal Brain Female	brain
11	chr6:36028400-36047400	Weak transcription	Colonic Mucosa	Colon
12	chr6:36028400-36047800	Weak transcription	Lung	lung
13	chr6:36028600-36035200	Weak transcription	NHEK	skin
14	chr6:36028600-36036600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:36028600-36043800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:36028600-36046600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:36028600-36050200	Weak transcription	Spleen	Spleen
18	chr6:36028800-36043200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:36029200-36048000	Weak transcription	NH-A	brain
20	chr6:36029600-36041600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:36029600-36041800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:36029600-36043400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:36029600-36047600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:36029800-36043800	Weak transcription	HMEC	breast
25	chr6:36030000-36035200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:36030200-36042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:36030800-36036000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:36030800-36043200	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:36031000-36042600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:36031200-36035000	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr6:36031200-36036400	Enhancers	Liver	Liver
32	chr6:36031400-36040600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:36031600-36036000	Enhancers	Adipose Nuclei	Adipose
34	chr6:36031600-36036200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:36031600-36037200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:36031600-36037800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:36031600-36041200	Weak transcription	Dnd41	blood
38	chr6:36031800-36035200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:36031800-36036000	Enhancers	Osteobl	bone
40	chr6:36032200-36035600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr6:36032200-36035600	Enhancers	Stomach Mucosa	stomach
42	chr6:36032200-36035800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:36032200-36036800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:36032200-36038200	Enhancers	Colon Smooth Muscle	Colon
45	chr6:36032400-36035200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr6:36032400-36036600	Enhancers	Fetal Heart	heart
47	chr6:36032600-36035600	Enhancers	Brain Substantia Nigra	brain
48	chr6:36032600-36035800	Enhancers	Fetal Lung	lung
49	chr6:36032800-36035200	Weak transcription	NHDF-Ad	bronchial
50	chr6:36032800-36035600	Enhancers	Brain Angular Gyrus	brain

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