Variant report

Variant	rs59139182
Chromosome Location	chr1:58299025-58299026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12134674	0.83[ASN][1000 genomes]
rs2897383	0.82[ASN][1000 genomes]
rs58268559	0.94[ASN][1000 genomes]
rs60635715	0.98[ASN][1000 genomes]
rs61342595	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829937	chr1:58258288-58406506	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58293000-58301000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:58296800-58299600	Enhancers	NHEK	skin
3	chr1:58296800-58299800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:58296800-58301600	Enhancers	HMEC	breast
5	chr1:58297200-58299600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:58297200-58299800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:58297200-58300600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:58297600-58299200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:58297600-58299200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:58297600-58299400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:58298400-58299200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:58298600-58300800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:58298600-58300800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:58298800-58301000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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