Variant report

Variant	rs59144355
Chromosome Location	chr18:9673179-9673180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:9670935..9675283-chr18:9677129..9681931,4	K562	blood:
2	chr18:9613080..9618986-chr18:9672487..9675941,11	MCF-7	breast:
3	chr18:9671290..9675239-chr18:9678368..9680804,3	MCF-7	breast:
4	chr18:9671775..9674338-chr18:9683094..9685173,2	K562	blood:
5	chr18:9672006..9673869-chr18:9677639..9679588,2	MCF-7	breast:
6	chr18:9610770..9614979-chr18:9672273..9674769,4	MCF-7	breast:
7	chr18:9671374..9674373-chr18:9705168..9708061,3	MCF-7	breast:
8	chr18:9574087..9575900-chr18:9670643..9673512,2	MCF-7	breast:
9	chr18:9613504..9616306-chr18:9671786..9673528,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000263627	Chromatin interaction
ENSG00000154845	Chromatin interaction
ENSG00000264644	Chromatin interaction
ENSG00000212572	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9953380	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv576449	chr18:9623052-9700382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9659800-9685400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:9663600-9673400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr18:9670800-9674200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr18:9671000-9673400	Enhancers	HMEC	breast
5	chr18:9671200-9675000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr18:9671200-9675200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr18:9671600-9673400	Weak transcription	Spleen	Spleen
8	chr18:9671600-9673400	Enhancers	NHEK	skin
9	chr18:9672400-9673200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr18:9672400-9674000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr18:9672600-9674000	Enhancers	Liver	Liver
12	chr18:9672800-9673400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr18:9672800-9673400	Enhancers	Hela-S3	cervix
14	chr18:9672800-9673800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr18:9672800-9673800	Enhancers	Aorta	Aorta
16	chr18:9672800-9673800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr18:9672800-9674000	Enhancers	Colonic Mucosa	Colon
18	chr18:9672800-9674200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr18:9672800-9674200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr18:9672800-9674200	Enhancers	Primary B cells from peripheral blood	blood
21	chr18:9672800-9674200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr18:9672800-9674200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr18:9672800-9674200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr18:9672800-9674200	Enhancers	Fetal Intestine Large	intestine
25	chr18:9672800-9674200	Enhancers	Placenta	Placenta
26	chr18:9672800-9674400	Enhancers	Primary B cells from cord blood	blood
27	chr18:9672800-9674400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr18:9672800-9674400	Enhancers	Pancreas	Pancrea
29	chr18:9672800-9674600	Enhancers	Fetal Intestine Small	intestine
30	chr18:9672800-9674600	Enhancers	GM12878-XiMat	blood
31	chr18:9672800-9674800	Enhancers	Stomach Mucosa	stomach
32	chr18:9673000-9673200	Enhancers	HepG2	liver
33	chr18:9673000-9673400	Enhancers	Duodenum Mucosa	Duodenum
34	chr18:9673000-9673400	Active TSS	A549	lung
35	chr18:9673000-9673600	Weak transcription	Esophagus	oesophagus
36	chr18:9673000-9673600	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links