Variant report

Variant	rs59148558
Chromosome Location	chr2:231443278-231443279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11898876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73104901	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106823	0.89[AFR][1000 genomes]
rs73106825	0.88[AFR][1000 genomes]
rs9749860	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875953	chr2:231415189-231457819	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763113	chr2:231441828-231445303	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231439800-231443800	Enhancers	Primary T cells fromperipheralblood	blood
2	chr2:231440200-231443400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr2:231440600-231443400	Enhancers	Primary T cells from cord blood	blood
4	chr2:231440800-231443400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr2:231441000-231447200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:231441800-231443400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr2:231442000-231443600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:231442600-231445000	Enhancers	Primary B cells from peripheral blood	blood
9	chr2:231442800-231443400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr2:231442800-231443400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:231442800-231444000	Enhancers	Primary B cells from cord blood	blood
12	chr2:231442800-231444200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr2:231443000-231443400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr2:231443000-231443400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:231443200-231443400	Flanking Active TSS	GM12878-XiMat	blood
16	chr2:231443200-231443600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr2:231443200-231444000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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