Variant report

Variant	rs59152451
Chromosome Location	chr12:85857369-85857370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1398438	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1512724	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1512727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1849383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1913136	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34293292	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55936484	0.93[AFR][1000 genomes]
rs7137028	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73377122	0.92[AFR][1000 genomes]
rs73377184	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74112020	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74112021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv817242	chr12:85622245-86069213	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1053044	chr12:85843030-85942504	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036617	chr12:85855093-86010549	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85851400-85859200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:85855400-85858600	Weak transcription	HMEC	breast
3	chr12:85855400-85858600	Weak transcription	NHEK	skin
4	chr12:85855600-85859800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:85856600-85857400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:85856600-85859600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr12:85856600-85859600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:85857200-85858200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr12:85857200-85858800	Weak transcription	Fetal Kidney	kidney
10	chr12:85857200-85861200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links