Variant report

Variant	rs5915676
Chromosome Location	chrX:6302378-6302379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs5915677	1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949481	chrX:5883977-6401143	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv533221	chrX:5970948-6352423	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv948484	chrX:6057749-6401143	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv869533	chrX:6138534-7087750	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv524163	chrX:6184334-6418059	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	esv2422345	chrX:6279519-6709757	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:6299400-6302400	Enhancers	Fetal Thymus	thymus
2	chrX:6300600-6303200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chrX:6300800-6303200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chrX:6300800-6303200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chrX:6301000-6303000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chrX:6301200-6302400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chrX:6301200-6302600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chrX:6301200-6303000	Enhancers	H9 Cell Line	embryonic stem cell
9	chrX:6301200-6303000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chrX:6301400-6302600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chrX:6301400-6303000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chrX:6301400-6303200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chrX:6301600-6302600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chrX:6301600-6302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chrX:6301600-6309600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chrX:6302000-6302800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chrX:6302000-6303200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chrX:6302200-6303000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chrX:6302200-6303000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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