Variant report

Variant	rs59157640
Chromosome Location	chr1:173393123-173393124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173392621..173394893-chr1:173446400..173448143,2	MCF-7	breast:
2	chr1:173384577..173387294-chr1:173392404..173396188,3	MCF-7	breast:
3	chr1:173389930..173391478-chr1:173391748..173393584,2	MCF-7	breast:
4	chr1:173391693..173394474-chr1:173452509..173454513,2	K562	blood:
5	chr1:173387025..173388692-chr1:173391343..173393384,2	K562	blood:
6	chr1:173392536..173394729-chr1:173398389..173400168,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117592	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12239195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59059742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173372000-173398600	Weak transcription	Brain Substantia Nigra	brain
2	chr1:173375200-173398600	Weak transcription	Esophagus	oesophagus
3	chr1:173376200-173429000	Weak transcription	Gastric	stomach
4	chr1:173376400-173400800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:173378400-173398400	Weak transcription	Brain Angular Gyrus	brain
6	chr1:173379000-173398400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:173379200-173393200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:173380200-173398400	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:173380200-173398600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr1:173380200-173398600	Weak transcription	Psoas Muscle	Psoas
11	chr1:173380400-173398400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:173380400-173398600	Weak transcription	Thymus	Thymus
13	chr1:173380400-173398800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:173383000-173398600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:173385600-173398600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:173385600-173398600	Weak transcription	Spleen	Spleen
17	chr1:173386000-173397800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr1:173387600-173429000	Weak transcription	Lung	lung
19	chr1:173387800-173398400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:173387800-173398600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr1:173388000-173398400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:173388000-173398400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:173388000-173398600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:173389600-173393200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:173389600-173393400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr1:173389600-173393600	Weak transcription	Hela-S3	cervix
27	chr1:173389600-173394200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr1:173389600-173394200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:173389600-173394200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr1:173389600-173394400	Weak transcription	A549	lung
31	chr1:173389600-173394600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr1:173389600-173395200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:173389600-173395400	Weak transcription	Colonic Mucosa	Colon
34	chr1:173389600-173398000	Weak transcription	Fetal Stomach	stomach
35	chr1:173389600-173398000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:173389600-173398400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr1:173389600-173398400	Weak transcription	Primary B cells from cord blood	blood
38	chr1:173389600-173398400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:173389600-173398400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr1:173389600-173398400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:173389600-173398400	Weak transcription	NH-A	brain
42	chr1:173389600-173398600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr1:173389600-173398600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:173389600-173398600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr1:173389600-173398600	Weak transcription	Left Ventricle	heart
46	chr1:173389600-173399200	Weak transcription	Pancreas	Pancrea
47	chr1:173389600-173400600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr1:173389800-173398000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr1:173389800-173398400	Weak transcription	Fetal Lung	lung
50	chr1:173390000-173393600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links