Variant report

Variant	rs59160403
Chromosome Location	chr4:148648727-148648728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10006193	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10011328	0.93[ASN][1000 genomes]
rs12508085	0.86[ASN][1000 genomes]
rs13115978	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4490438	0.93[ASN][1000 genomes]
rs56946313	0.93[ASN][1000 genomes]
rs59488354	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828600	0.93[ASN][1000 genomes]
rs7669809	0.93[ASN][1000 genomes]
rs7675072	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148644800-148652400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:148645000-148652000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:148645000-148652200	Weak transcription	Fetal Kidney	kidney
4	chr4:148645000-148652400	Weak transcription	Liver	Liver
5	chr4:148646000-148652200	Weak transcription	Adipose Nuclei	Adipose
6	chr4:148646200-148651600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:148646200-148652200	Weak transcription	GM12878-XiMat	blood
8	chr4:148646400-148651400	Weak transcription	HepG2	liver
9	chr4:148646400-148652400	Weak transcription	A549	lung
10	chr4:148647600-148649200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:148647600-148649600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:148648000-148649200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:148648200-148649400	Enhancers	HMEC	breast
14	chr4:148648200-148649400	Enhancers	NHEK	skin
15	chr4:148648400-148648800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:148648400-148649000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:148648400-148649200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:148648400-148649200	Enhancers	NHDF-Ad	bronchial
19	chr4:148648600-148652200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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