Variant report

Variant	rs59161142
Chromosome Location	chr11:64322891-64322892
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:64322860-64323010	BJ	skin:	n/a	n/a
2	MAX	chr11:64322711-64323400	A549	lung:	n/a	n/a
3	SMC3	chr11:64322864-64323035	HepG2	liver:	n/a	n/a
4	MYBL2	chr11:64322873-64323312	HepG2	liver:	n/a	n/a
5	ARID3A	chr11:64322882-64323208	HepG2	liver:	n/a	n/a
6	JUN	chr11:64322547-64323823	K562	blood:	n/a	n/a
7	CEBPB	chr11:64322854-64323194	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64322890-64322940	AoSMC	blood vessel:	n/a
2	chr11:64322890-64322940	CMK	blood:	n/a
3	chr11:64322890-64322940	HepG2	liver:	n/a
4	chr11:64322890-64322940	AG04449	skin:	fetal
5	chr11:64322890-64322940	BE2_C	brain:	n/a
6	chr11:64322890-64322940	GM12891	blood:	n/a
7	chr11:64322890-64322940	HRCEpiC	kidney:	n/a
8	chr11:64322890-64322940	HEEpiC	esophagus:	n/a
9	chr11:64322890-64322940	K562	blood:	n/a
10	chr11:64322890-64322940	NT2-D1	testis:	n/a
11	chr11:64322890-64322940	NHDF-neo	bronchial:	n/a
12	chr11:64322890-64322940	ovcar-3	ovarian:	n/a
13	chr11:64322890-64322940	Caco-2	colon:	n/a
14	chr11:64322890-64322940	PrEC	prostate:	n/a
15	chr11:64322890-64322940	HL-60	blood:	n/a
16	chr11:64322890-64322940	A549	lung:	n/a
17	chr11:64322890-64322940	PFSK-1	brain:	n/a
18	chr11:64322890-64322940	HEK293	kidney:	embryo
19	chr11:64322890-64322940	BJ	skin:	n/a
20	chr11:64322890-64322940	HMEC	breast:	n/a
21	chr11:64322890-64322940	NB4	blood:	n/a
22	chr11:64322890-64322940	MCF-7	breast:	n/a
23	chr11:64322890-64322940	NH-A	brain:	n/a
24	chr11:64322890-64322940	GM06990	blood:	n/a
25	chr11:64322890-64322940	GM19239	blood:	n/a
26	chr11:64322890-64322940	ProgFib	skin:	n/a
27	chr11:64322890-64322940	SAEC	small airway:	n/a
28	chr11:64322890-64322940	LNCaP	prostate:	n/a
29	chr11:64322890-64322940	HRE	kidney:	n/a
30	chr11:64322890-64322940	HCF	heart:	n/a
31	chr11:64322890-64322940	HAEpiC	amniotic membrane:	n/a
32	chr11:64322890-64322940	HNPCEpiC	eye:	n/a
33	chr11:64322890-64322940	SK-N-SH	brain:	n/a
34	chr11:64322890-64322940	H1-hESC	embryonic stem cell:	embryo
35	chr11:64322890-64322940	RPTEC	kidney:	n/a
36	chr11:64322890-64322940	U87	brain:	n/a
37	chr11:64322890-64322940	Hepatocyte	liver:	n/a
38	chr11:64322890-64322940	MCF10A-Er-Src	breast:	n/a
39	chr11:64322890-64322940	HCM	heart:	n/a
40	chr11:64322890-64322940	AG10803	skin:	n/a
41	chr11:64322890-64322940	HRPEpiC	eye:	n/a
42	chr11:64322890-64322940	ECC-1	luminal epithelium:	n/a
43	chr11:64322890-64322940	HIPEpiC	eye:	n/a
44	chr11:64322890-64322940	GM12892	blood:	n/a
45	chr11:64322890-64322940	SK-N-MC	brain:	n/a
46	chr11:64322890-64322940	NHBE	bronchial:	n/a
47	chr11:64322890-64322940	AG09319	gingival:	n/a
48	chr11:64322890-64322940	HUVEC	blood vessel:	n/a
49	chr11:64322890-64322940	PANC-1	pancreas:	n/a
50	chr11:64322890-64322940	Hela-S3	cervix:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64322277..64322945-chr11:64420424..64421201,2	MCF-7	breast:

No data

Variant related genes	Relation type
SLC22A11	TF binding region
SLC22A11	CpG island

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10536543	0.96[ASN][1000 genomes]
rs56369910	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897692	chr11:64305452-64386526	Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv897693	chr11:64305452-64440920	Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2422214	chr11:64312491-64483418	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv832188	chr11:64315368-64485209	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64320600-64323600	Enhancers	Fetal Lung	lung
2	chr11:64320600-64324400	Enhancers	Spleen	Spleen
3	chr11:64320800-64323400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:64320800-64323400	Enhancers	Placenta	Placenta
5	chr11:64320800-64323600	Enhancers	Fetal Stomach	stomach
6	chr11:64320800-64323600	Enhancers	Ovary	ovary
7	chr11:64320800-64324600	Enhancers	Fetal Muscle Leg	muscle
8	chr11:64320800-64324800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:64320800-64326000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:64321000-64323200	Enhancers	Fetal Muscle Trunk	muscle
11	chr11:64321200-64323000	Enhancers	Liver	Liver
12	chr11:64321200-64323000	Enhancers	Brain Angular Gyrus	brain
13	chr11:64321200-64323000	Enhancers	Brain Hippocampus Middle	brain
14	chr11:64321200-64323000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr11:64321200-64323000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:64321200-64323200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:64321200-64323200	Enhancers	Primary B cells from cord blood	blood
18	chr11:64321200-64323200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:64321200-64323200	Enhancers	NHDF-Ad	bronchial
20	chr11:64321200-64323400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:64321200-64323400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:64321200-64323400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:64321200-64323400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:64321200-64323400	Enhancers	Adipose Nuclei	Adipose
25	chr11:64321200-64323400	Enhancers	Brain Cingulate Gyrus	brain
26	chr11:64321200-64323400	Enhancers	Brain Substantia Nigra	brain
27	chr11:64321200-64323400	Enhancers	Colon Smooth Muscle	Colon
28	chr11:64321200-64323400	Enhancers	Rectal Smooth Muscle	rectum
29	chr11:64321200-64323400	Enhancers	Osteobl	bone
30	chr11:64321200-64323600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:64321200-64323600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr11:64321200-64323600	Enhancers	Colonic Mucosa	Colon
33	chr11:64321200-64323600	Enhancers	HSMM	muscle
34	chr11:64321200-64323600	Enhancers	HSMMtube	muscle
35	chr11:64321200-64323600	Enhancers	NH-A	brain
36	chr11:64321200-64324000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr11:64321200-64324200	Enhancers	Fetal Thymus	thymus
38	chr11:64321200-64324400	Enhancers	Fetal Intestine Small	intestine
39	chr11:64321200-64325000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr11:64321200-64325200	Enhancers	Fetal Intestine Large	intestine
41	chr11:64321400-64323200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:64321400-64323400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr11:64321400-64323600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:64321400-64324200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:64321600-64323200	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr11:64321600-64323200	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr11:64321600-64324600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:64321600-64324800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:64321600-64325000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:64321800-64323200	Weak transcription	Right Ventricle	heart

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