Variant report

Variant	rs59161415
Chromosome Location	chr7:12130536-12130537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10227694	0.88[ASN][1000 genomes]
rs10236430	0.86[ASN][1000 genomes]
rs10271169	0.88[ASN][1000 genomes]
rs58993503	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6958807	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6959050	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6959860	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6960010	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6977621	0.80[AFR][1000 genomes]
rs7783906	0.86[ASN][1000 genomes]
rs7795724	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830906	chr7:12001764-12177869	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv887626	chr7:12119520-12151476	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1031893	chr7:12127098-12155796	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59161415	TMEM106B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12127200-12142600	Weak transcription	Fetal Lung	lung
2	chr7:12130000-12130600	Enhancers	Spleen	Spleen
3	chr7:12130000-12131200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
4	chr7:12130200-12130600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr7:12130200-12131000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:12130200-12131600	Enhancers	Fetal Intestine Large	intestine
7	chr7:12130400-12130600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:12130400-12131000	Flanking Active TSS	Placenta	Placenta
9	chr7:12130400-12131200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:12130400-12131600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:12130400-12132200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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