Variant report

Variant	rs59168173
Chromosome Location	chr4:119667188-119667189
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:119665912..119667477-chr4:119669901..119672187,2	K562	blood:
2	chr4:119665912..119668457-chr4:119669901..119672120,2	K562	blood:
3	chr4:119657007..119658653-chr4:119665008..119667662,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55712195	1.00[EUR][1000 genomes]
rs56683591	1.00[EUR][1000 genomes]
rs61393887	1.00[EUR][1000 genomes]
rs72905464	1.00[EUR][1000 genomes]
rs72907289	1.00[EUR][1000 genomes]
rs7681126	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv427693	chr4:119493919-119674742	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119607800-119693800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:119608600-119674000	Weak transcription	Stomach Mucosa	stomach
3	chr4:119625800-119718000	Weak transcription	Hela-S3	cervix
4	chr4:119630400-119674200	Weak transcription	A549	lung
5	chr4:119633400-119667600	Weak transcription	Brain Germinal Matrix	brain
6	chr4:119640800-119692600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr4:119641600-119679800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr4:119642200-119668200	Strong transcription	Duodenum Mucosa	Duodenum
9	chr4:119642400-119668400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:119644400-119667400	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:119645400-119668200	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:119649200-119670600	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:119649200-119675200	Weak transcription	Brain Substantia Nigra	brain
14	chr4:119649200-119687600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:119649200-119693600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:119650600-119668400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:119651800-119672600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:119651800-119687400	Weak transcription	Thymus	Thymus
19	chr4:119652000-119672400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:119653400-119668400	Strong transcription	HepG2	liver
21	chr4:119654400-119672600	Strong transcription	NH-A	brain
22	chr4:119654400-119687400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:119654800-119676000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:119655400-119672800	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr4:119656200-119667800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:119659000-119667200	Strong transcription	HSMMtube	muscle
27	chr4:119659200-119668000	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:119659600-119690400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:119660000-119672800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr4:119660200-119668000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:119660400-119673600	Strong transcription	Fetal Intestine Large	intestine
32	chr4:119660400-119688200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr4:119660400-119689800	Weak transcription	Brain Angular Gyrus	brain
34	chr4:119660600-119667600	Weak transcription	K562	blood
35	chr4:119660800-119667800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:119661000-119667800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr4:119661600-119671200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:119661800-119671400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr4:119661800-119672800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr4:119661800-119684600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr4:119662000-119667800	Weak transcription	Fetal Thymus	thymus
42	chr4:119662000-119671200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr4:119662000-119677400	Weak transcription	Fetal Kidney	kidney
44	chr4:119662000-119687600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr4:119662000-119694400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr4:119663000-119667600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:119663000-119668600	Weak transcription	Brain Anterior Caudate	brain
48	chr4:119663400-119668200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr4:119663400-119668200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:119663400-119668400	Strong transcription	Adipose Nuclei	Adipose

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