Variant report
| Variant | rs59168467 |
|---|---|
| Chromosome Location | chr1:223617408-223617409 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:9)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:9 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:223608260..223610550-chr1:223616264..223617958,2 | MCF-7 | breast: | |
| 2 | chr1:223305854..223308381-chr1:223616232..223619219,2 | MCF-7 | breast: | |
| 3 | chr1:223534849..223538429-chr1:223615365..223617815,4 | MCF-7 | breast: | |
| 4 | chr1:223574260..223577674-chr1:223613937..223618124,4 | MCF-7 | breast: | |
| 5 | chr1:223605027..223607773-chr1:223615819..223618091,2 | MCF-7 | breast: | |
| 6 | chr1:223611669..223614866-chr1:223615779..223618104,3 | K562 | blood: | |
| 7 | chr1:223604902..223607898-chr1:223616304..223618206,2 | MCF-7 | breast: | |
| 8 | chr1:223594003..223597385-chr1:223616098..223619072,3 | MCF-7 | breast: | |
| 9 | chr1:223615693..223618296-chr1:223662772..223664878,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000143502 | Chromatin interaction |
| ENSG00000187554 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs73124288 | 1.00[AMR][1000 genomes] |
| rs73124299 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73126109 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73126115 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7539931 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832670 | chr1:223561771-223683381 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv873208 | chr1:223603809-223639469 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv999167 | chr1:223607886-223643710 | ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv818822 | chr1:223614738-223632045 | Weak transcription ZNF genes & repeats Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
