Variant report

Variant	rs5916959
Chromosome Location	chrX:105135897-105135898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4466542	0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870233	chrX:105119831-105678186	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv531152	chrX:105135228-105669012	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:105096200-105136600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chrX:105132200-105137200	Weak transcription	Ovary	ovary
3	chrX:105132800-105152800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chrX:105134000-105137600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chrX:105134000-105152800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chrX:105134800-105137400	Weak transcription	Fetal Muscle Trunk	muscle
7	chrX:105134800-105137800	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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