Variant report

Variant	rs59172604
Chromosome Location	chr2:39176017-39176018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13395448	1.00[ASN][1000 genomes]
rs13430379	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023148	0.83[AFR][1000 genomes]
rs17023149	0.83[AFR][1000 genomes]
rs72916860	0.89[AFR][1000 genomes]
rs9973559	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873884	chr2:39154463-39332093	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2755359	chr2:39169049-39417849	Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39150000-39186600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:39150400-39184800	Weak transcription	Psoas Muscle	Psoas
4	chr2:39160400-39186600	Weak transcription	Pancreas	Pancrea
5	chr2:39163800-39183600	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:39171600-39176200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:39174400-39176800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:39174600-39176800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:39175000-39186600	Weak transcription	Ovary	ovary
10	chr2:39175000-39187000	Weak transcription	Brain Angular Gyrus	brain
11	chr2:39175200-39179200	Weak transcription	Fetal Lung	lung
12	chr2:39175200-39186800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:39175400-39176200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:39175800-39176800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr2:39175800-39176800	Flanking Active TSS	HepG2	liver
16	chr2:39176000-39176200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:39176000-39176400	Enhancers	Brain Substantia Nigra	brain
18	chr2:39176000-39176600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr2:39176000-39176800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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