Variant report

Variant	rs59180500
Chromosome Location	chr16:80092309-80092310
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80090196..80092562-chr16:80093240..80096087,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60040048	1.00[AMR][1000 genomes]
rs73581770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80088400-80095000	Enhancers	Fetal Lung	lung
2	chr16:80088400-80095400	Enhancers	Fetal Stomach	stomach
3	chr16:80089200-80092600	Enhancers	Adipose Nuclei	Adipose
4	chr16:80089200-80094800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr16:80090600-80093800	Enhancers	Brain Germinal Matrix	brain
6	chr16:80090800-80092400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr16:80091400-80093400	Enhancers	Rectal Smooth Muscle	rectum
8	chr16:80091800-80092600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr16:80091800-80092600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr16:80091800-80092600	Enhancers	Fetal Muscle Leg	muscle
11	chr16:80092000-80092600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr16:80092000-80092600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr16:80092000-80092600	Enhancers	Brain Angular Gyrus	brain
14	chr16:80092000-80092600	Enhancers	Brain Hippocampus Middle	brain
15	chr16:80092000-80092600	Enhancers	HMEC	breast
16	chr16:80092000-80092800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr16:80092000-80093000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr16:80092000-80093600	Enhancers	Fetal Brain Male	brain
19	chr16:80092200-80092400	Active TSS	Brain Substantia Nigra	brain
20	chr16:80092200-80092400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr16:80092200-80092400	Enhancers	Fetal Muscle Trunk	muscle
22	chr16:80092200-80092600	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr16:80092200-80092600	Enhancers	Esophagus	oesophagus
24	chr16:80092200-80092600	Enhancers	Right Atrium	heart
25	chr16:80092200-80092600	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr16:80092200-80092600	Flanking Active TSS	NHEK	skin
27	chr16:80092200-80092600	Enhancers	Osteobl	bone
28	chr16:80092200-80092800	Enhancers	Ovary	ovary

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