Variant report

Variant	rs59181450
Chromosome Location	chr3:142403415-142403416
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142400757..142403430-chr3:142404368..142406089,2	K562	blood:
2	chr3:142401576..142404164-chr3:142406354..142407940,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57625476	0.89[AFR][1000 genomes]
rs59936227	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142366000-142435400	Weak transcription	Colonic Mucosa	Colon
2	chr3:142369400-142408400	Weak transcription	Pancreas	Pancrea
3	chr3:142379200-142413000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:142384400-142411400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:142385800-142415400	Weak transcription	A549	lung
6	chr3:142386400-142411800	Weak transcription	NHEK	skin
7	chr3:142387400-142404200	Weak transcription	Small Intestine	intestine
8	chr3:142387400-142413400	Weak transcription	Stomach Mucosa	stomach
9	chr3:142389200-142412400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:142389200-142414800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:142389400-142408800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:142389400-142410000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:142389800-142442400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:142390000-142406200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:142392400-142404200	Weak transcription	Fetal Intestine Large	intestine
16	chr3:142392600-142410200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:142392800-142418000	Weak transcription	HepG2	liver
18	chr3:142392800-142425400	Weak transcription	Dnd41	blood
19	chr3:142392800-142433000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:142393000-142407000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:142393000-142426000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:142393400-142426200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:142399400-142407200	Weak transcription	Esophagus	oesophagus
24	chr3:142400200-142404000	Weak transcription	Brain Anterior Caudate	brain
25	chr3:142400200-142406200	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr3:142401200-142410000	Weak transcription	Primary T cells from cord blood	blood
27	chr3:142402000-142404600	Strong transcription	Fetal Intestine Small	intestine
28	chr3:142402400-142404400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:142402400-142408800	Strong transcription	Duodenum Mucosa	Duodenum
30	chr3:142403000-142406000	Strong transcription	Liver	Liver
31	chr3:142403000-142412800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr3:142403400-142404400	Enhancers	Brain Hippocampus Middle	brain

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