Variant report

Variant	rs59190871
Chromosome Location	chr13:97972456-97972457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11618766	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1553010	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1553011	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17301432	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59101263	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs66473447	0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs875104	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9513238	0.81[AMR][1000 genomes]
rs9516905	0.93[EUR][1000 genomes]
rs9516909	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516912	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
3	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr13:97955200-97986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr13:97959400-97988800	Weak transcription	Fetal Intestine Large	intestine
7	chr13:97961000-97973800	Weak transcription	NHEK	skin
8	chr13:97961400-97975200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:97961400-97987200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:97961600-97975400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:97961800-97975200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:97961800-97977600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:97961800-97978000	Weak transcription	HMEC	breast
14	chr13:97962000-97979200	Weak transcription	HUVEC	blood vessel
15	chr13:97962000-97991200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr13:97962400-97978200	Weak transcription	K562	blood
17	chr13:97963000-97972600	Enhancers	Brain Substantia Nigra	brain
18	chr13:97963000-97984400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:97963600-97977000	Weak transcription	Hela-S3	cervix
20	chr13:97965000-97972600	Enhancers	Brain Hippocampus Middle	brain
21	chr13:97965200-97985800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr13:97965600-97988800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr13:97965800-97987200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr13:97967000-97980400	Weak transcription	Fetal Thymus	thymus
25	chr13:97967400-97972600	Enhancers	Colon Smooth Muscle	Colon
26	chr13:97967400-97991400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr13:97967600-97972600	Enhancers	Brain Cingulate Gyrus	brain
28	chr13:97968000-97972600	Enhancers	Brain Anterior Caudate	brain
29	chr13:97968200-97972600	Enhancers	Fetal Muscle Leg	muscle
30	chr13:97969200-97979200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr13:97969400-97981600	Weak transcription	Spleen	Spleen
32	chr13:97969400-97981800	Weak transcription	Esophagus	oesophagus
33	chr13:97969600-97982000	Weak transcription	Primary B cells from cord blood	blood
34	chr13:97969600-97987200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr13:97969800-97986600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr13:97971200-97972600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr13:97971400-97973600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr13:97971400-97975000	Weak transcription	NH-A	brain
39	chr13:97971400-97979800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr13:97971400-97981800	Weak transcription	Gastric	stomach
41	chr13:97971600-97973200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr13:97971600-97973400	Weak transcription	HepG2	liver
43	chr13:97971600-97973600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr13:97971600-97974000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:97971600-97979800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr13:97971600-97981600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:97971600-97991400	Weak transcription	Stomach Mucosa	stomach
48	chr13:97971800-97972600	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr13:97971800-97972800	Weak transcription	Left Ventricle	heart
50	chr13:97971800-97972800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links